PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C015804P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HSF
Protein Properties Length: 384aa    MW: 44112.4 Da    PI: 4.7086
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C015804P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.61.1e-34601522103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k++ei++d +++++isws +g+sf+v+d++ f++++Lp++Fkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+k+ll++
  MELO3C015804P1  60 FLTKTFEIVDDFNTDHVISWSFSGTSFIVWDPHCFSTQLLPRFFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEGFIRGQKHLLKN 145
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     ikr++++
  MELO3C015804P1 146 IKRRRTT 152
                     ***9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.06E-3456149IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.2E-5956149IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.6E-3756149IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.5E-186083IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.3E-3060149IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-1898110IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434099123IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-18111123IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MKFFRGELDF YSIVAEMNPL FPIKEEFTGS SSSDVDGERS AVLTPPVPME GLHDAGPPPF  60
LTKTFEIVDD FNTDHVISWS FSGTSFIVWD PHCFSTQLLP RFFKHNNFSS FVRQLNTYGF  120
RKIDPDRWEF ANEGFIRGQK HLLKNIKRRR TTSYHHHQTL QSQGASGACV EVGQFGVDAE  180
MDRLKRDKQV LMMELVKLRQ EQQNTRAYLQ AMEQRLRGTE IKQKQMMNFL ARAMKNPSFI  240
QQLVQQKEKR KELEEAITKK RRRPIEQAGQ RNCGGGSGRF LGEGSNTIKI EPLESDEYGF  300
GITELEALAL EMQGLGKTRY EDGEEEEDEE DDDDLLPPED EDKVLDEGFW EELFSERLEE  360
ARNEDENVNV LADRLGYLGS SPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-255515212123Heat shock factor protein 1
5d5u_B2e-255515121131Heat shock factor protein 1
5d5v_B2e-255515121131Heat shock factor protein 1
5d5v_D2e-255515121131Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142148LKNIKRR
2248262KRKELEEAITKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818030.0LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008451314.10.0PREDICTED: heat stress transcription factor A-6b-like isoform X1
SwissprotQ9LUH81e-129HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A1S3BR890.0A0A1S3BR89_CUCME; heat stress transcription factor A-6b-like isoform X1
STRINGXP_008451314.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-124heat shock transcription factor A6B