PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C015625P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family FAR1
Protein Properties Length: 714aa    MW: 81141.1 Da    PI: 6.0106
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C015625P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1545.5e-1753125288
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                     fY+eYA++ GFs +  + ++sk +g+i+ r+fvC +e +++++ ++              C+a+l++++++++kw+vtk+++eH+H+
  MELO3C015625P1  53 FYDEYARRFGFSSKLGQLSRSKSDGTIVARDFVCGRECSKRKSADS--------------CDAMLRIELKDQDKWVVTKFVKEHSHS 125
                     9************************************999998777..............**************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.4E-1353126IPR004330FAR1 DNA binding domain
PfamPF105512.8E-28220312IPR018289MULE transposase domain
PROSITE profilePS5096611.152498534IPR007527Zinc finger, SWIM-type
PfamPF044343.8E-10499532IPR007527Zinc finger, SWIM-type
SMARTSM005755.8E-8509536IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MVEVDGLAHP AVVDDSDVDP HEGEINTVED HEDGIIEPFV GMEFESEGDA KTFYDEYARR  60
FGFSSKLGQL SRSKSDGTIV ARDFVCGREC SKRKSADSCD AMLRIELKDQ DKWVVTKFVK  120
EHSHSTVNSK KNRGGRTTSQ AEANRSLNNA STINYAIRNA GRKRTLGRDA QNMLEYFKKM  180
QSENPGFFYA IQLDEDNRMA NVFWADARSR AAYSHFGDAV TLDTMYRVNQ FRVPFAPFTG  240
VNHHGQTILF GCALLLDESE ASFVWLFKTF LTAMNDRQPV SITTDQDRAI HVAVAQVFPE  300
ARHCISRWHV LREGQQKLAH VCLTHPNFQV ELYNCINLTE TIEEFESAWN CIIEKYNLGR  360
NDWLLSLYNA RAQWVPVYVR DSFFAVISPN QGYDNSFFDG YVNQQTTLPL FFRQYERALE  420
NWFEKEIEAD FDTMCTTPVL RTPSPMEKQA ANLYTRKIFA KFQEELVETF VYTANRIEGD  480
AALSTFRVAK FEDDQKAYVV TLNYPDMRAN CSCQMFEYSG ILCRHVLTVF TVTNVLTLPS  540
HYILKRWTRN ARSGLGSDER AIELHGQESL SSRFNTLCRE AIRYAEEGAT APETYNVAMT  600
ALKEAGKKVA IVKKNVAKVT PPSSQVSGAG YDERKTSASA SDTTPLLWPR QDEVMRRFNL  660
NDAGAPVQSI ADLNYPHIAP VSLHRDDNPP DHMVCSFNFA YFLVQNCEHG YSI*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818060.0LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008451084.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A1S3BRG00.0A0A1S3BRG0_CUCME; protein FAR1-RELATED SEQUENCE 3
STRINGXP_008451084.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]