PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C015513P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRF
Protein Properties Length: 335aa    MW: 37885.4 Da    PI: 9.7498
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C015513P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.71.1e-2476119144
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                     d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk+++
  MELO3C015513P1  76 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVD 119
                     79***************************************986 PP
2QLQ59.31.1e-20843237
             QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                    +FT aQ+q+L++Q+l++Ky++++ P+PpeLl+ i++
  MELO3C015513P1  8 PFTSAQWQELEHQALIFKYMVSGIPIPPELLFSIKR 43
                    8*******************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009517.6E-13743IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.3E-15841IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.862843IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.76576120IPR014977WRC domain
PfamPF088791.8E-2077118IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MSARSMFPFT SAQWQELEHQ ALIFKYMVSG IPIPPELLFS IKRSALDSPF TSKLFPHHPQ  60
PVGWNYLQMS LGRKIDPEPG RCRRTDGKKW RCSKEAYPDS KYCERHMHRG KNRSRKPVDV  120
LKTTATNEIN HLSNPTFSSL NSNSSLLSYR PFPAHQISST PNNGNGISIK DTNTLLLLEP  180
GSYSDKNPDY RSRYTYGLKE EVDEKVFFSQ EPSEATGRAD FSASSIASSL QLTPLTMSSS  240
SLYPKPNNSS SLQSDQSSFY QLHQSVTEPL KQQKRDESQK TVHRFFDEWP PKDRGSWLDF  300
ADKPSNTSSV STTRLSISIP TASNDFPIFR SKNP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818060.0LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008450915.10.0PREDICTED: growth-regulating factor 4
TrEMBLA0A1S3BQB10.0A0A1S3BQB1_CUCME; growth-regulating factor 4
STRINGXP_008450915.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40433459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-56growth-regulating factor 5