PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C015476P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | C3H | ||||||||
Protein Properties | Length: 355aa MW: 40217.1 Da PI: 7.2774 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.7 | 7.4e-07 | 66 | 84 | 8 | 26 |
GGGGTS--TTTTT-SS-SS CS zf-CCCH 8 ffartGtCkyGdrCkFaHg 26 f +G C++G++C+F+H+ MELO3C015476P1 66 KFTSSGSCPRGEKCNFHHD 84 56668*************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.361 | 58 | 86 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.6E-4 | 60 | 85 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.84E-6 | 61 | 87 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.9E-7 | 62 | 86 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.7E-5 | 63 | 84 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.779 | 90 | 118 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-5 | 91 | 116 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.019 | 92 | 117 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.3E-4 | 95 | 117 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF04677 | 2.1E-38 | 135 | 248 | IPR006768 | Cwf19-like, C-terminal domain-1 |
SuperFamily | SSF54197 | 9.26E-10 | 136 | 211 | IPR011146 | HIT-like domain |
Gene3D | G3DSA:3.30.428.10 | 3.4E-7 | 140 | 218 | IPR011146 | HIT-like domain |
Pfam | PF04676 | 2.0E-15 | 274 | 351 | IPR006767 | Cwf19-like protein, C-terminal domain-2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003824 | Molecular Function | catalytic activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MSAAEISMKP PNTTLSPYTL TERKAEASDS AKRSSNSVSE SQYWRYEVSQ KRQKYGTSDN 60 NKLCFKFTSS GSCPRGEKCN FHHDIDAREQ SQRGVCFDFL NKGKCERGPD CNFKHSFQNE 120 FDSHSGKRRS GNAGTNRSKE CWFCLSSPNI ESHLIVSVGE NFYCALAKGP LVPDHILVIP 180 VEHFPNTLSL GPDYETEINR LQNCLGKYFK SQGKEVVFFE WVSKRSTHAN LQAVPIPTSR 240 AHVVQNIFDM AAEKLGFKFV ISKSDAPSEG RKLLRTQFDS DHSFFYAELP ECVTLSHVIE 300 ENEIFPAQFG REVLAGLLNM ADKADWRNCA HSKEEETKMA EDFKIRFENF DPNK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6id0_U | 1e-14 | 141 | 351 | 675 | 887 | CWF19-like protein 2 |
6id1_U | 1e-14 | 141 | 351 | 675 | 887 | CWF19-like protein 2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681806 | 0.0 | LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025. | |||
GenBank | LN713256 | 0.0 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008450861.2 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 64 isoform X2 | ||||
Swissprot | Q84WU9 | 1e-152 | C3H64_ARATH; Zinc finger CCCH domain-containing protein 64 | ||||
TrEMBL | A0A1S3BQ84 | 0.0 | A0A1S3BQ84_CUCME; zinc finger CCCH domain-containing protein 64 isoform X2 | ||||
STRING | XP_008450861.1 | 0.0 | (Cucumis melo) |