PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C015468P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GATA
Protein Properties Length: 340aa    MW: 36889.1 Da    PI: 8.4129
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C015468P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.5e-19194227134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  MELO3C015468P1 194 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 227
                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.0E-19188239IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-13189227No hitNo description
Gene3DG3DSA:3.30.50.105.8E-15192227IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.651192224IPR000679Zinc finger, GATA-type
CDDcd002023.26E-12193223No hitNo description
PROSITE patternPS003440194219IPR000679Zinc finger, GATA-type
PfamPF003204.7E-17194227IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MAPPYRDSFP SDHDDLDHLH YSSSHHHLFF PIVTPAQASS SSSSSLSFTA LDHSMISDDP  60
RSVELKHEGG GIMGCNNDQS IGNHEDHIEE TGLRFTIWKQ IDKRETSSCC ENNNNDNTHN  120
DSVKWSSSSS SSSKIKFMIN SNLQTETTPT RTIDSGRNVQ DLNPPSPSPS SIEQTNKRTS  180
ATTLHEGGAI IRTCSDCNTT KTPLWRSGPR GPKSLCNACG IRQRKARRAM AEAAAAATNG  240
GAVVLKTNKA VQHKITTKPA TTMTTTTALK RKYKDEVVVV SGHGGGDKGG GRKAKLCFEE  300
IKMGGRLSEI SSSYQRVFPQ DEREAAILLM TLSYGLLHG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818060.0LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008450852.10.0PREDICTED: GATA transcription factor 21
TrEMBLA0A1S3BPL10.0A0A1S3BPL1_CUCME; GATA transcription factor 21
STRINGXP_008450852.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.16e-17GATA family protein