PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C015241P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 297aa    MW: 34035.9 Da    PI: 6.292
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C015241P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00064154178123
                     EEETTTTEEESSHHHHHHHHHH..T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                     + C  C+k ++  ++++ H+++  H
  MELO3C015241P1 154 FYCDLCNKQYKLAMEFEAHLSSydH 178
                     78*****************987555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004432.1E-1660105IPR000467G-patch domain
PROSITE profilePS5017416.64862107IPR000467G-patch domain
PfamPF015851.0E-1463103IPR000467G-patch domain
PfamPF121711.6E-5154181IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280156178IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEYRGFSSRL ETNNPSKGYA REQESLGDDF IDDFRLPINH KPTENVDLDN VEQASLDTQL  60
TSSNVGYRLL QKMGWKGKGL GKDEQGIIEP IKSGMRDPKL GIGKQEEDDF FTAEENIQRK  120
KLDVEVEETE EHAKKTGERE EKIQTEVKEI RKVFYCDLCN KQYKLAMEFE AHLSSYDHNH  180
RKRFKEMREM HGSSSRDDRN KREQQREERE MAKFAQIADA RKKQQQLLEQ QERAAEAPVS  240
TELRNATSVA DQDQRKTLKF GFSSKGGTSK NMFGGAKKKP KVAPVASVFG NDSDDE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818061e-101LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132561e-101LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008450514.10.0PREDICTED: G patch domain-containing protein 8
TrEMBLA0A1S3BPC30.0A0A1S3BPC3_CUCME; G patch domain-containing protein 8
STRINGXP_008450514.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59772428