PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C015196P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NF-YA
Protein Properties Length: 270aa    MW: 29539.5 Da    PI: 8.223
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C015196P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA96.23.8e-30172228158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     ++p++VNaKQyq+Il+RRq+Rak+e+ekk  +k+rkpylheSRh+hA+rR R+sgGrF
  MELO3C015196P2 172 QDPVFVNAKQYQGILRRRQARAKAEAEKKS-IKARKPYLHESRHQHAIRRSRSSGGRF 228
                     58***************************9.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.2E-32170231IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115233.9171231IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.2E-26174228IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.1E-22174196IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860176196IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.1E-22205228IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MQSKSETNNQ LDPNGAPSTS IYYEPWWRGM GYNTFPLPVV GGNASSSTSL EFPNGGSESN  60
DGQSVSNNDV NDEEDDVSKE VQATGSPHSA GSYRQDTRKM QHVSSTLPAM HGECLTQSTQ  120
LELVGHSIAC ASNPYQDPYY GGMMAFYGHQ PLGYPMVGGP HARMPLPIEI AQDPVFVNAK  180
QYQGILRRRQ ARAKAEAEKK SIKARKPYLH ESRHQHAIRR SRSSGGRFAK KSEADGKEKH  240
SDKVSESGYR LNDGSEQQKG SSLMNKASE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-18172235265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818071e-148LN681807.1 Cucumis melo genomic scaffold, anchoredscaffold00024.
GenBankLN7132561e-148LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008450423.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X2
RefseqXP_008450424.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X2
SwissprotQ9LXV59e-70NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBLA0A1S3BPV30.0A0A1S3BPV3_CUCME; nuclear transcription factor Y subunit A-1-like isoform X2
STRINGXP_008450422.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40123461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.43e-54nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Siriwardana CL, et al.
    NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T.
    PLoS Genet., 2016. 12(12): p. e1006496
    [PMID:27977687]
  3. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]