PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C014958P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Dof

Protein Properties

Length: 260aa MW: 28743.8 Da PI: 8.408

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C014958P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.4	1.8e-39	35	91	6	62
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +kcprCdstntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvP+Ggg+rk kk + MELO3C014958P1 35 IKCPRCDSTNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKTKKLK 91 79***************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-25	33	89	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.292	35	89	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.4E-33	35	89	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	37	73	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MKNSLEEEIR QKSSTGRRKE NKNGDNCEEE LLGSIKCPRC DSTNTKFCYY NNYSLTQPRH 60 FCKTCRRYWT KGGALRNVPI GGGCRKTKKL KSSSSSSSSA KFFTGIIPPP PVPPPSVDFG 120 GIGGGGGGSC LSLASSIESL SSLNQDLHWK LQQQRLAMIL GDNEQQQQQP QNKVQNHNFF 180 QPILFHNLHH QDSPTTSTTI TTTTTTDQWS FPTQLSAPNN GASRTIDDVR GGWNNNNSND 240 DHNIGVEGWE DLHHFTAFP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681857	0.0	LN681857.1 Cucumis melo genomic scaffold, anchoredscaffold00023.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008450228.1	0.0	PREDICTED: dof zinc finger protein DOF5.7
TrEMBL	A0A1S3BNR3	0.0	A0A1S3BNR3_CUCME; dof zinc finger protein DOF5.7
STRING	XP_008450228.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3854	34	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.1	5e-33	Dof family protein