PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C014621P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 627aa    MW: 70919.2 Da    PI: 10.271
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C014621P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.1e-091069247
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..............TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg..............kgRtlkqcksrwqky 47
                     +rW t E++ll+ av+++G+ +W+++a +++                +t+ +c+++++++
   MELO3C014621P1 10 KRWGTLEELLLASAVNRHGTASWESVAMEIQnrcsqspsssssssSSLTPQDCRNKFYDL 69
                     59*****************************88888888888888777888888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-5345IPR009057Homeodomain-like
PROSITE profilePS500906.237470IPR017877Myb-like domain
SMARTSM007171.1E-6872IPR001005SANT/Myb domain
PfamPF002492.2E-81070IPR001005SANT/Myb domain
CDDcd001672.29E-41170No hitNo description
Gene3DG3DSA:1.20.920.102.1E-14251375IPR001487Bromodomain
SuperFamilySSF473701.83E-17252377IPR001487Bromodomain
SMARTSM002971.8E-15266375IPR001487Bromodomain
CDDcd043691.52E-14277370No hitNo description
PfamPF004397.8E-11278355IPR001487Bromodomain
PROSITE profilePS5001410.981285356IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MVKQRETNAK RWGTLEELLL ASAVNRHGTA SWESVAMEIQ NRCSQSPSSS SSSSSSLTPQ  60
DCRNKFYDLK RRFLSQNVID SDSDTNTLMP MLDELRKIRV QELRRDVERR DVLIVSLEMK  120
VKRLEEERDR SFNQSHEGSD LDTDKAKTNL HLQNPAASGD DSDDRENRSL NESNSTKAKP  180
EREKKSGGGY KRREKERNWG NWKGAAAAVD SNEAWESVSE SKQDGKEGAV SKQQSSDVQS  240
SGSLSQRKRC RNSSGEEPEV SPAKPKPKPL AVKSEPLLKL LDTIRSHQLG STFERRLRSQ  300
ESDRYKNLIR QHIDLRTIRC RVVKGAYADS IHRFFRDLLL LFNNAIIFFH RSSPENGAAL  360
KLRALVLKEM KDSIEKPQPV ILKSKPKQET DLSLPSSKPT TKPSTTIVGC RKRDSVATDC  420
KKADKNSRDV EVKPKVSDSS EIKIYEKGTW KKGSNSKERL RPTPTPTPVN SGQRSSRTSS  480
TSKNNGEVKH EYGGNELSSH DGMEVRMEKK ERVTKKKQGA VSFLKRMKQN SPNEAAEEDG  540
DASENECIKE EEEEEEEEEQ EEEEEGKRKV KKQKEGKKER VRRNGGGGGR GKKAVGRPPK  600
KTETVTVKRQ QREEVSSSKP QKRSRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1566574KRKVKKQKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818420.0LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008449745.10.0PREDICTED: transcriptional regulator ATRX-like
TrEMBLA0A1S3BNE20.0A0A1S3BNE2_CUCME; transcriptional regulator ATRX-like
STRINGXP_008449745.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.15e-57DNA-binding bromodomain-containing protein