PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C014604P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | Trihelix | ||||||||
Protein Properties | Length: 447aa MW: 50394.5 Da PI: 6.7815 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 68.7 | 1.1e-21 | 119 | 213 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +Wt++ v++Li+++ ++++ ++g kk++W+ vsk m+++g+++sp+qC++k+++lnkryk+++++ +k+ +++++++ ++ d++ MELO3C014604P1 119 KWTDEIVRLLIAVVACVGDDGEAGMgskrksgilHKKGKWRTVSKIMQSKGCHVSPQQCEDKFNDLNKRYKRLNDILGKGtSCRVVENPALMDSM 213 7**************88888887533456678889*********************************************669999999888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.4E-19 | 117 | 240 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 447 aa Download sequence Send to blast |
MDSSGLGGGF LSGNGGLLDL ESPIRRPQKT QLVNPSLTQR HQLNMMSNFE GDHQSIGILD 60 SKSLGQKDLL MAFNRGKAIA SACITNNYTS EEDEPSYTED GECSEFLKGK KGSPWQRMKW 120 TDEIVRLLIA VVACVGDDGE AGMGSKRKSG ILHKKGKWRT VSKIMQSKGC HVSPQQCEDK 180 FNDLNKRYKR LNDILGKGTS CRVVENPALM DSMPHLSSKA KDDVRKILSS KHLFYKEMCA 240 YHNGQTIPGC QDVDFQGKIL PAANFSKGNN ESEEAEDSDS DSDSGESDNE DDHSPAENRL 300 WSSESRGRDK VSADDGPLWS NSVGKNEFEG QIDVFLSDPT KSQWERKVWI KKQMLQLQEQ 360 CNSFQAQSVE LEKQRFKWLR YCSKKNRDLE RARLENERMK LDNEQRVLQL KRKEMELESK 420 RSDSAVGPIL AFDRIQGREQ LDLGMH* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681842 | 0.0 | LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022. | |||
GenBank | LN713259 | 0.0 | LN713259.1 Cucumis melo genomic chromosome, chr_5. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008449727.1 | 0.0 | PREDICTED: uncharacterized protein LOC103491522 | ||||
TrEMBL | A0A1S3BM36 | 0.0 | A0A1S3BM36_CUCME; uncharacterized protein LOC103491522 | ||||
STRING | XP_008449727.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10546 | 32 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 1e-83 | sequence-specific DNA binding transcription factors |