PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C014604P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Trihelix
Protein Properties Length: 447aa    MW: 50394.5 Da    PI: 6.7815
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C014604P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix68.71.1e-21119213185
        trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                     +Wt++ v++Li+++  ++++ ++g           kk++W+ vsk m+++g+++sp+qC++k+++lnkryk+++++ +k+ +++++++ ++ d++
  MELO3C014604P1 119 KWTDEIVRLLIAVVACVGDDGEAGMgskrksgilHKKGKWRTVSKIMQSKGCHVSPQQCEDKFNDLNKRYKRLNDILGKGtSCRVVENPALMDSM 213
                     7**************88888887533456678889*********************************************669999999888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.4E-19117240No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MDSSGLGGGF LSGNGGLLDL ESPIRRPQKT QLVNPSLTQR HQLNMMSNFE GDHQSIGILD  60
SKSLGQKDLL MAFNRGKAIA SACITNNYTS EEDEPSYTED GECSEFLKGK KGSPWQRMKW  120
TDEIVRLLIA VVACVGDDGE AGMGSKRKSG ILHKKGKWRT VSKIMQSKGC HVSPQQCEDK  180
FNDLNKRYKR LNDILGKGTS CRVVENPALM DSMPHLSSKA KDDVRKILSS KHLFYKEMCA  240
YHNGQTIPGC QDVDFQGKIL PAANFSKGNN ESEEAEDSDS DSDSGESDNE DDHSPAENRL  300
WSSESRGRDK VSADDGPLWS NSVGKNEFEG QIDVFLSDPT KSQWERKVWI KKQMLQLQEQ  360
CNSFQAQSVE LEKQRFKWLR YCSKKNRDLE RARLENERMK LDNEQRVLQL KRKEMELESK  420
RSDSAVGPIL AFDRIQGREQ LDLGMH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818420.0LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008449727.10.0PREDICTED: uncharacterized protein LOC103491522
TrEMBLA0A1S3BM360.0A0A1S3BM36_CUCME; uncharacterized protein LOC103491522
STRINGXP_008449727.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105463240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-83sequence-specific DNA binding transcription factors