PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C014530P2

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NF-YC

Protein Properties

Length: 281aa MW: 31229.6 Da PI: 4.712

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C014530P2	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	59.2	8.7e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +P l+ska elf+ +l r++ + + rt++ ++++++ ++fdfl d+v + MELO3C014530P2 6 DTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQNLCDRTYEITLKRGARTMNSLHLKQCIQTFNVFDFLRDVVGK 86 5789*************************************************************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.2E-26	2	72	IPR009072	Histone-fold
SuperFamily	SSF47113	8.56E-19	3	89	IPR009072	Histone-fold
Pfam	PF00808	5.7E-18	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MKKKLDTRFP AARIKKIMQA DEDVGKIAMA VPLLVSKALE LFLQNLCDRT YEITLKRGAR 60 TMNSLHLKQC IQTFNVFDFL RDVVGKVPDL GGSDAAEDRH ISKRRKVADE DVGNDSDEES 120 KRSKVTEAGH CISGRGRGRG RGRGRGRSSR HLEKDTAIHY NNFEDDLEIP NHPDDDLHKT 180 EPDNGVAEAR VENDNTLVDK ALEPSVRNFD LNVNLDEDGD STSVPVVAST GSPVKPPTDS 240 KHDEYPGWSV AEMEKMAIDP IQLANMNETI DDEEDYDEDG *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	1e-23	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	145	RGRGRGRGRG
2	136	146	RGRGRGRGRGR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681842	0.0	LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBank	LN713259	0.0	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008449610.1	0.0	PREDICTED: dr1-associated corepressor-like isoform X1
TrEMBL	A0A1S3BMF4	0.0	A0A1S3BMF4_CUCME; dr1-associated corepressor-like isoform X1
STRING	XP_008449610.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1728	34	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-61	nuclear factor Y, subunit C11