PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C014503P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NF-YB | ||||||||
Protein Properties | Length: 156aa MW: 17481.7 Da PI: 4.7276 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 42.1 | 2.1e-13 | 11 | 103 | 7 | 94 |
NF-YB 7 flPianvsrimkkvlPanak...is..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 +lP + v r++k+ l + ++ is kd+ e + fi ++++ a+d c++ kr+ti+++d+l al ++ f + v plk+ l+++r + MELO3C014503P1 11 ELPKTIVRRVVKEKLSQCSRdqdISvnKDSLLAFCESARIFIHYLSATANDICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKN 103 5788889999999987644322255115555556666778*************************************************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 6.1E-31 | 11 | 148 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.4E-10 | 11 | 80 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 9.11E-24 | 12 | 117 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MEKKIVAGIE ELPKTIVRRV VKEKLSQCSR DQDISVNKDS LLAFCESARI FIHYLSATAN 60 DICKESKRQT IKAEDVLKAL EDMEFPELVR PLKASLNEFR RKNAGKKAAA LREKEVKKKR 120 KVEEPTVEGT DGESIDGVGD DDNDEDEDEN EASDN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 99 | 120 | RRKNAGKKAAALREKEVKKKRK |
2 | 111 | 120 | REKEVKKKRK |
3 | 116 | 121 | KKKRKV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681842 | 1e-93 | LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022. | |||
GenBank | LN713259 | 1e-93 | LN713259.1 Cucumis melo genomic chromosome, chr_5. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008449581.1 | 1e-107 | PREDICTED: DNA polymerase epsilon subunit D | ||||
TrEMBL | A0A1S3BNA4 | 1e-106 | A0A1S3BNA4_CUCME; DNA polymerase epsilon subunit D | ||||
STRING | XP_008449581.1 | 1e-107 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11863 | 32 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 2e-41 | nuclear factor Y, subunit B11 |