PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C014408P4
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 220aa    MW: 24255.4 Da    PI: 10.5989
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C014408P4genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.35.8e-08145186855
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++r+R  ri +++e L ellP++      K + a+ L  A+++Ik+Lq
  MELO3C014408P4 145 ADRQRKMRIAERLEALLELLPPS------KENQASALDDAIDHIKYLQ 186
                     68*********************......9*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.46E-9144204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-5145186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-7145196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MEGQNGCNNS VRMLSLNFGA NVNIVSQARR DFTNHHHVLP ADRNVNQTNI PHLTEWTQAA  60
KTSPAFVEFI ADTSNFSRET STKDVIAVVP STVQTINGVS ELRSKISYNH LAGSYNSKPT  120
DSRNNARGTL SKSRPSSSSK RGYSADRQRK MRIAERLEAL LELLPPSKEN QASALDDAID  180
HIKYLQLRIK VMADKKTLVT SGMISMMPKV TKNKLNGSN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818420.0LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016900721.11e-163PREDICTED: uncharacterized protein LOC103491334 isoform X5
TrEMBLA0A1S4DXL31e-161A0A1S4DXL3_CUCME; uncharacterized protein LOC103491334 isoform X5
STRINGXP_008449451.11e-119(Cucumis melo)