PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C014408P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 297aa    MW: 33267.9 Da    PI: 7.3244
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C014408P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.69.3e-08178219855
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++r+R  ri +++e L ellP++      K + a+ L  A+++Ik+Lq
  MELO3C014408P1 178 ADRQRKMRIAERLEALLELLPPS------KENQASALDDAIDHIKYLQ 219
                     68*********************......9*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-8177229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-5178219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-7178229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MCFLFFVVTI NIFTHYFLKM IVHEVGFKCS YVKMEGQNGC NNSVRMLSLN FGANVNIVSQ  60
ARRDFTNHHH VLPADRNVNQ TNIPHLTEWT QAAKTSPAFV EFIADTSNFS RETSTKDVIA  120
VVPSTVQTIN GVSELRSKIS YNHLAGSYNS KPTDSRNNAR GTLSKSRPSS SSKRGYSADR  180
QRKMRIAERL EALLELLPPS KENQASALDD AIDHIKYLQL RIKDLSQSKL GGELSSEPFI  240
FVEGYGHYMN HQEMQISEPL EEMVGKLMEV DPLAAAQLLE NKGLFVMPMD FVEGLC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818420.0LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008449453.10.0PREDICTED: transcription factor bHLH69-like isoform X2
TrEMBLA0A1S3BN010.0A0A1S3BN01_CUCME; transcription factor bHLH69-like isoform X2
STRINGXP_008449451.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF121642426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.16e-15LJRHL1-like 2