PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C014406P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 646aa    MW: 71514.5 Da    PI: 6.2307
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C014406P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.64e-074584921554
                     HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +N++f  Lr+ +P       +K++Ka+iL  +veY+ +L
  MELO3C014406P1 458 SLNDKFIILRSAVPFT-----TKMDKASILGDTVEYLEQL 492
                     69*************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-495185IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508889.864443492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-6452498IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-10457509IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.34E-7457497No hitNo description
Gene3DG3DSA:4.10.280.101.3E-11458507IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-5458492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MEGILQFAVQ SVEWTYSLFW RFSTQQRMLV WGDGFYNGPI KTTKTLHPAA AAQQQHQQHQ  60
HSASLSLHRT HQLTDLYNSL SASDTLRRPT SAALSPEDLT ETEWFYLLCL SFSFPPGFGL  120
PGKAYCKKKH VWITGANEID SKIFSRAILA KTVVCIPLMD GVVELGSTDK VKEDMAFIQH  180
IKSIFIETER RCEAQKPALS ELSTSNSATS LDHFYYKHLF HSTNSSNRKE SELEDEMDSD  240
SSTSNSSNSN AAEGGGGGCP CWPSTVAGAV MASKPSELIM QLEPSEDIRL GSPDDASNNF  300
FPNLSHSQSP PPELNTNFDY HLPSNTNATT QLQLPTLGYS SAAEAVMTED QDTHYTNMLS  360
AILNLNQNHQ SSQWLNSSAV SNITCSTQSA FSKWTHHSDG LYCVKAGTAS TSQCLLKSIL  420
HTIPFLHNKH HREQNLYKFC DGQSQNGISQ DFLANPESLN DKFIILRSAV PFTTKMDKAS  480
ILGDTVEYLE QLRQKVQDLE AQNLEFQSSR RISFQEVQRN SPVPRTCLDK RKLRILEGVG  540
DGCTRPKMLK LPSPPTPLDT NLQVSIIGGD GLLELQCPYK EGLLLDILLI LQGLQIETTA  600
VRSSVSNGIF IAELRAKVKE DTDGKKASIL EVKSAIQQII PCVDT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-191418524192Transcription factor MYC3
4rqw_B4e-191418524192Transcription factor MYC3
4rs9_A4e-191418524192Transcription factor MYC3
4yz6_A4e-191418524192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818420.0LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008449449.10.0PREDICTED: basic helix-loop-helix protein A isoform X2
TrEMBLA0A1S3BM280.0A0A1S3BM28_CUCME; basic helix-loop-helix protein A isoform X2
STRINGXP_008449448.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36373249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.18e-70bHLH family protein