PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C014305P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 344aa    MW: 38640.9 Da    PI: 10.1962
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C014305P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.12.8e-31276335260
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                     +D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYegeH h+k
  MELO3C014305P1 276 SDDYSWRKYGQKPIKGSPHPRGYYKCSSIrGCPARKHVERCLEDPSMLIVTYEGEHSHPK 335
                     69************************9988****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.5E-16233273IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.807.0E-34263335IPR003657WRKY domain
PROSITE profilePS5081130.412270336IPR003657WRKY domain
SuperFamilySSF1182902.88E-27273334IPR003657WRKY domain
SMARTSM007746.1E-38275335IPR003657WRKY domain
PfamPF031066.4E-27277334IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MEEVEEATKS AIESCHGVLN LLLQPPPSPP HQHHFKNLMV ETKEAVFKFK KVISLLNSDF  60
SHPRFRNFNK IPLPLPQNSL LDSPNYTLHP PNKNLFNFPP GSNSKVSIFL GNPDLELSQN  120
DKNTLHIPKQ SPSLNFSFPH HHHHQQQQQQ QSVLAHQKQM KQQAEMTFLR NNNGMNLNFD  180
TSNCTLTMSS ARSFISSLSM DGSVIGDRSS FHLIGPSTTT TTTSGNSKRK FSARGEEGSL  240
KCGSTSKCHC SKKRKHRVKR SIKVPAISNK LADIPSDDYS WRKYGQKPIK GSPHPRGYYK  300
CSSIRGCPAR KHVERCLEDP SMLIVTYEGE HSHPKMLTQS AHT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-21268333771WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840120.0GU984012.1 Cucumis sativus WRKY protein (WRKY9) mRNA, complete cds.
GenBankGU9840130.0GU984013.1 Cucumis sativus WRKY protein (WRKY10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008449343.10.0PREDICTED: probable WRKY transcription factor 21
SwissprotO043367e-99WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A1S3BLU20.0A0A1S3BLU2_CUCME; probable WRKY transcription factor 21
STRINGXP_008449343.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-96WRKY DNA-binding protein 21