PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C014232P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ARF
Protein Properties Length: 655aa    MW: 72143.5 Da    PI: 6.6879
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C014232P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.51.3e-23120221199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF   + +
  MELO3C014232P1 120 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--RAE 210
                     89****************************996555555..89***********************************************..448 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++ l+v+++r+
  MELO3C014232P1 211 NGDLCVGIRRA 221
                     8999****997 PP
2Auxin_resp1132.8e-37243326183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     aa+ as++++Fe+v++Prast+eF+vk++ v++al+++++ GmRfkmafetedss++++ +Gt+ +v+ +dp+rWp+S+Wr+L+
  MELO3C014232P1 243 AAKLASNGQPFEIVFYPRASTPEFCVKAALVKAALQIRWCSGMRFKMAFETEDSSRISWfMGTINSVQVADPLRWPESPWRLLQ 326
                     7899******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-37113224IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-29114226IPR015300DNA-binding pseudobarrel domain
CDDcd100173.57E-21119220No hitNo description
PROSITE profilePS5086313.112120222IPR003340B3 DNA binding domain
SMARTSM010191.7E-21120222IPR003340B3 DNA binding domain
PfamPF023628.0E-22120221IPR003340B3 DNA binding domain
PfamPF065078.4E-32243326IPR010525Auxin response factor
PROSITE profilePS5174521.026568648IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MITFMDSKEK LKEVEKCLDP QLWHACAGGM VQMPPVNARV FYFPQGHAEH SCAPVDFRNC  60
PKVPSYTLCR VSAIKFLADP DTDEVFAKLR LIPINGSELD FEDDGIGRLN GSEQDKPTSF  120
AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSADPPVQTI LAKDVHGETW KFRHIYRGTP  180
RRHLLTTGWS TFVNHKKLVA GDSIVFLRAE NGDLCVGIRR AKRGIGDGPE SSCGWNPAGV  240
IEAAKLASNG QPFEIVFYPR ASTPEFCVKA ALVKAALQIR WCSGMRFKMA FETEDSSRIS  300
WFMGTINSVQ VADPLRWPES PWRLLQVTWD EPDLLQNVKR VSPWLVELVS NMSPIHLAPF  360
SPPRKKFRYP QHPDFPLDNQ PPVPSFSSYL HGTGSPFGCP PDNNPAGMQG ARHAHFGLSL  420
SDFHLSKLQS GLFSIGYRSL DPAAGSTRLS GNIMTEKPSM SENVSCLLTM AHSTQASKKF  480
DGVKTPQLIL FGRPILTELQ MSQSFSGDTV SPVGTGNSSS DGNGDKMTNL SDGSGSALHQ  540
QGLPEGSACE NFQWYKDNRQ EIDPNLDTGH CKVFMESEDV GRTLDLSSLG SYEELYRKLG  600
NMFGIDNSET LNHVLYRDVS GAVKHVGDEQ FSDFIKTARR LTILTDSGSN NVGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A6e-891834751388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8433430.0KC843343.1 Cucumis sativus auxin response factor 10b (ARF10b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008449245.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1S3BM800.0A0A1S3BM80_CUCME; Auxin response factor
STRINGXP_008449245.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]