PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C014133P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 546aa    MW: 60833.8 Da    PI: 5.6936
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C014133P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4263.1e-1301765442373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     +e L +cA+a++++d+   ++l+++l+ ++s +g+p+qRl ay++eAL ar a+s+s++ykal+++e      +e l+++++++e++P++kf++l
  MELO3C014133P1 176 KEMLCACARAIDENDMLTGEWLVSELRGMVSVSGEPIQRLGAYLLEALVARTASSGSSIYKALKCKEPI---GAELLSYMHVLYEICPYFKFGYL 267
                     789*****************************************************************9...9********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      aN aI ea++ge+rvHiiDf+i qG QW++L+qaLa+Rp+gpp++ iTg+++++s   +   le +++rL  +Ae+l++pfef+  +a + +++
  MELO3C014133P1 268 SANGAIAEAIKGENRVHIIDFQIAQGNQWITLMQALANRPGGPPKVTITGIDDSTSAfaRGGGLEIVRKRLLILAESLKIPFEFHG-IAGSASEI 361
                     *****************************************************99889999*************************.6999**** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     + e+L+v+pgEa+aV+++l lh+++desv ++++rd++L+lvkslsPkvv+vve e++ n+++Fl rfl++l+yy+a+f+s++++lpr+++eri+
  MELO3C014133P1 362 QREDLKVQPGEAIAVSFSLVLHHMPDESVGSQNHRDRILQLVKSLSPKVVTVVELESNNNTAPFLSRFLQTLKYYTAVFESIDVTLPRDHKERIN 456
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     vE+++l+r+ivn+vaceg+er+erhe ++kWr+rl +aGFkp pls ++++++++ll+++ +  y++ee++g l+lgW +++Lv+ SaW
  MELO3C014133P1 457 VEQHCLARDIVNLVACEGTERIERHELFRKWRSRLFMAGFKPHPLSPFVNATIEALLKNYCD-KYTLEERDGVLYLGWLNQNLVTSSAW 544
                     ************************************************************95.5************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.535149526IPR005202Transcription factor GRAS
PfamPF035141.1E-127176544IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MKEPSRKKVP NQSYGFYEQP QQEPGSCYWP PINHVDGLYS DDAFDQNHLP SEAFKQYCNL  60
ESSSGTNSYP HQNSSSTASF TSNGSPSSHQ ECHSYPIDLY HSPDNNCGSP ISRSCLTDDA  120
ADDLRHKIRE LETAMLGPDA DGLDVYSITE PIHPLLPVQD AGWKDVADII SRRDLKEMLC  180
ACARAIDEND MLTGEWLVSE LRGMVSVSGE PIQRLGAYLL EALVARTASS GSSIYKALKC  240
KEPIGAELLS YMHVLYEICP YFKFGYLSAN GAIAEAIKGE NRVHIIDFQI AQGNQWITLM  300
QALANRPGGP PKVTITGIDD STSAFARGGG LEIVRKRLLI LAESLKIPFE FHGIAGSASE  360
IQREDLKVQP GEAIAVSFSL VLHHMPDESV GSQNHRDRIL QLVKSLSPKV VTVVELESNN  420
NTAPFLSRFL QTLKYYTAVF ESIDVTLPRD HKERINVEQH CLARDIVNLV ACEGTERIER  480
HELFRKWRSR LFMAGFKPHP LSPFVNATIE ALLKNYCDKY TLEERDGVLY LGWLNQNLVT  540
SSAWI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-631775446374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818600.0LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008449075.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_008449076.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_008449077.10.0PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A1S3BL860.0A0A1S3BL86_CUCME; scarecrow-like transcription factor PAT1
STRINGXP_008449075.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]