PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C014131P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 451aa    MW: 51685.8 Da    PI: 7.3722
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C014131P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.9e-07161183326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      + C+++ + G+Ck+G++C++ H+
  MELO3C014131P1 161 PRTCHYYNK-GFCKHGNSCRYLHS 183
                     578******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.62E-5156185IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5157184IPR000571Zinc finger, CCCH-type
SMARTSM003560.0085158184IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.68158185IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4161183IPR000571Zinc finger, CCCH-type
PROSITE profilePS5164410.729211294IPR025605OST-HTH/LOTUS domain
PfamPF128723.0E-11211289IPR025605OST-HTH/LOTUS domain
Gene3DG3DSA:3.30.70.3306.3E-6327418IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549286.86E-7370433IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MEFSGHTKTV FHRIRQIDPD NVMKIIGFLL LHDDGDQEMA RLALAHESHI EKVVMLAKTE  60
LHQRRSMPVP VSPLAIRNRQ SSTSPPGWEQ QQLTNKHTPD YIPLGYHDSM YDIQNSVNLF  120
CLEDHLEQSL SSFDCSYAEN VINSFSTRNT RHYSNVPDFQ PRTCHYYNKG FCKHGNSCRY  180
LHSNNLLPGS LSHLYNSNSN VNDDHVFRPG SLERLEFEIV ELLKSRRGSP ISIASLPMIY  240
YEKYGKVLQA EGYLTESQRH GKSGFSLTKL LTRLKSSIQV IDRPHGQHAV ILAEDAPKFM  300
DHRKDRNDPG SIVSSARQIY MTFPADSTFT EDDVSDYFRQ MLNACICLGL LMFQFAHIDL  360
ILIMCDCSVH YGMVEDVRIP CQQRRMFGFV TFHSIETVKL ILSDDSEHLI CGARVLVKPY  420
REKSKLLERF YFSPKFHSSA YSFSPIPSTS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818600.0LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008449070.10.0PREDICTED: zinc finger CCCH domain-containing protein 18-like
TrEMBLA0A1S3BL770.0A0A1S3BL77_CUCME; zinc finger CCCH domain-containing protein 18-like
STRINGXP_008449070.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF288177