PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C014029P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | GRAS | ||||||||
Protein Properties | Length: 105aa MW: 11950.1 Da PI: 7.8469 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 105.5 | 7.5e-33 | 1 | 101 | 111 | 213 |
GRAS 111 rvHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl...vakrledleleeLrvkpgEal 202 ++H++Dfdi++G+QWp+L+qaLa+R ++p+lRiT+ g + + l++tg+rL+kfA++lg++f+f++l + ++ + + + +L + p+Eal MELO3C014029P1 1 MIHVLDFDIMHGVQWPPLMQALADR-FPSPMLRITATGL----DLNFLHKTGDRLSKFAQSLGLRFQFHPLlllHDRDHHRVIPAALTLFPDEAL 90 79**********************9.788**********....9**************************988555689999************* PP GRAS 203 aVnlvlqlhrl 213 aVn+vl lhr MELO3C014029P1 91 AVNCVLYLHRY 101 *********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 22.614 | 1 | 104 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.5E-30 | 1 | 101 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 105 aa Download sequence Send to blast |
MIHVLDFDIM HGVQWPPLMQ ALADRFPSPM LRITATGLDL NFLHKTGDRL SKFAQSLGLR 60 FQFHPLLLLH DRDHHRVIPA ALTLFPDEAL AVNCVLYLHR YGIL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681860 | 1e-176 | LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021. | |||
GenBank | LN713260 | 1e-176 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008448967.1 | 1e-65 | PREDICTED: scarecrow-like protein 18 | ||||
Swissprot | Q9ZWC5 | 2e-22 | SCL18_ARATH; Scarecrow-like protein 18 | ||||
TrEMBL | A0A1S3BLL3 | 3e-64 | A0A1S3BLL3_CUCME; scarecrow-like protein 18 | ||||
STRING | XP_008448967.1 | 4e-65 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12926 | 21 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55580.1 | 6e-22 | GRAS family protein |
Publications ? help Back to Top | |||
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