PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C013904P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GATA
Protein Properties Length: 540aa    MW: 59947 Da    PI: 6.6456
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C013904P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.84.5e-16741135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  MELO3C013904P1  7 CYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGT 41
                    ****************55555***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.2E-10155IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.04E-11545No hitNo description
CDDcd002022.17E-16651No hitNo description
PROSITE profilePS5011411.345740IPR000679Zinc finger, GATA-type
PfamPF003206.9E-14741IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-12741IPR013088Zinc finger, NHR/GATA-type
PfamPF139196.2E-10285370IPR028020ASX homology domain
PfamPF165508.4E-9300366IPR032368UCH-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG TLANYTPLHA RADPDEFEDK  60
RISRWKNLSM CKNKEVKLLK RKQYQDNGLV VGVIPDHAQS FHKVVDEDTS NRSSSGSAIS  120
NSESCAQFGG ADASDLTGPS QSTAWEAMVP SRKRTCVGRP KSTAVEKLTK DLYTILREQQ  180
SYFSGSSEED LLFENETPMV SVEIGHGSVL MRHPSSIARE EESEASSISV DNKQFSLNEV  240
HSESSILPVH YEAQNTFVNF STLGIGRKHS TGQGFLNEQI KRDRPQSERM QALGNRNSPL  300
CNIDLTDILN FREFTKQLTS ENQQELMKYL PSVDTEELPD SLNSMFESPQ FKENLNSFKQ  360
LLTEGVFDFS FPGAKREDCK ILSRLVLLDL SKSKWVEQYN LLKKCSSGES VQGFAAASSS  420
LTNGKRVLDG QNKKLSETRT TMKSPKRVMT KTSTESKELV DSDGSCFSPR SLFALPSDGG  480
SFTLEALHFD EDSSDQDLLL DVRSNSSFPQ AELLHPALSF VAQQASNSSS SVNLRLMHR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818600.0LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016900626.10.0PREDICTED: GATA transcription factor 26-like isoform X2
SwissprotQ8W4H11e-156GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A1S4DXB70.0A0A1S4DXB7_CUCME; GATA transcription factor 26-like isoform X2
STRINGXP_004163679.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-153GATA transcription factor 26