PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C013882P2

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

SRS

Protein Properties

Length: 389aa MW: 43106.5 Da PI: 9.7002

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C013882P2	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	25.7	3.2e-08	50	84	5	39
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathv 39 + +C+ CGn a+ C +e C+ CC + C hv MELO3C013882P2 50 KPKCRVCGNVARSRCPYESCKSCCARNQNPCYIHV 84 568*******************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.4E-5	52	85	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MAAPSPTLSN NSSDTATTTA GAVAANVAVS PNHLANRTGT PPKTLRGLNK PKCRVCGNVA 60 RSRCPYESCK SCCARNQNPC YIHVLKANAT FPDKTPSSSS PLFDKQSPDL SSSGTSNRVA 120 SLRQLSSNFS QFNNVRLPIR SPKPVTRKDA AAINEWRFSK LREFRERHIE AENEAFDRYM 180 KNVNLLEEVF SMRSMIDDKS LKDGPSVNSG IEANLEEMTP GLKLKLGSTS DNSRKRIRKI 240 VEDGLRKIKI VETTDNVNEV TDHAQADRDA DQMNLNDGCK TIKGSHAKRT RALGDLIEKL 300 NKARNEEDLK SCLAMKHQLF NRLQTTSSQA ESEETDTSKE QQVIKKDLDS RKELGYSLPK 360 LINKTNIDQQ TLNQIDAHFS SLKQIGNL*

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MAAPSPTLSN NSSDTATTTA GAVAANVAVS PNHLANRTGT PPKTLRGLNK PKCRVCGNVA  60
RSRCPYESCK SCCARNQNPC YIHVLKANAT FPDKTPSSSS PLFDKQSPDL SSSGTSNRVA  120
SLRQLSSNFS QFNNVRLPIR SPKPVTRKDA AAINEWRFSK LREFRERHIE AENEAFDRYM  180
KNVNLLEEVF SMRSMIDDKS LKDGPSVNSG IEANLEEMTP GLKLKLGSTS DNSRKRIRKI  240
VEDGLRKIKI VETTDNVNEV TDHAQADRDA DQMNLNDGCK TIKGSHAKRT RALGDLIEKL  300
NKARNEEDLK SCLAMKHQLF NRLQTTSSQA ESEETDTSKE QQVIKKDLDS RKELGYSLPK  360
LINKTNIDQQ TLNQIDAHFS SLKQIGNL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681860	0.0	LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008448750.1	0.0	PREDICTED: uncharacterized protein LOC103490821
TrEMBL	A0A1S3BKF8	0.0	A0A1S3BKF8_CUCME; uncharacterized protein LOC103490821
STRING	XP_008448750.1	0.0	(Cucumis melo)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	2e-84