PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C013874P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ARR-B
Protein Properties Length: 560aa    MW: 62317.5 Da    PI: 6.0589
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C013874P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.27.6e-28315368256
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      +++WtpeLH++Fv+aveqL G ++A+P++ilelmkv+gLt+++v+SHLQkYR++
  MELO3C013874P1 315 LKVDWTPELHRKFVQAVEQL-GVNQAIPSRILELMKVEGLTRHNVASHLQKYRMH 368
                     5899****************.9*******************************96 PP
2Response_reg24.71.1e-09201261109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+ d + + +  +++ le+ +y +v +  +  +al  +  k   +++ ++ +  ++ +G   +k +++++ +lp i+++     +++ +++ +G
  MELO3C013874P1  20 VLLLDGDTSSAAEIKTKLEEMEY-VVVSYCNENDALSAISSKPetFHVAIVEVTTSNHEGN--FKFLEAAK-DLPTIMISNIHCLSTMMKCIALG 110
                     68888899999999*********.***************665555************9995..56666655.9*******9999*********** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a++fl Kp + ++l++
  MELO3C013874P1 111 AMEFLQKPLSDDKLRN 126
                     *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521724.41E-1416134IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.2E-1316159No hitNo description
PROSITE profilePS5011018.7619132IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.0E-720127IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.79E-621131No hitNo description
PROSITE profilePS5129416.769311370IPR017930Myb domain
SuperFamilySSF466892.06E-18312371IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-26312370IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-25314369IPR006447Myb domain, plants
PfamPF002495.9E-8317366IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MVCTANDLHG WKDFPKGLRV LLLDGDTSSA AEIKTKLEEM EYVVVSYCNE NDALSAISSK  60
PETFHVAIVE VTTSNHEGNF KFLEAAKDLP TIMISNIHCL STMMKCIALG AMEFLQKPLS  120
DDKLRNIWQH VVHKAFNAGG SAVPNSLKPI KESVVSMLHL ELENSENENQ VEKKLEILSG  180
DDDNNHELLE GSDKYPAPST PQQKHGMRLV DDGDCQDQLN SSLEKECGEQ DGESKSVETT  240
CINSLVEGTS QVENSQLPDR EAIKEEENSA DGCGAASNID HDTHDQYNIS SSEKNKSKPC  300
GLSNPCGIKV SRKKLKVDWT PELHRKFVQA VEQLGVNQAI PSRILELMKV EGLTRHNVAS  360
HLQKYRMHKR HILPKEEDGS WSHSKDPMRK NYYPQRPVMA FPPPYHSNHI MPVAPIYPPW  420
GHMACPSPGV RMWVPPGYPP WRPPEIWPWK SYPGMHADTW GCPVTPLPHS PLSSHPQQHI  480
SGFENADPYD KSYSIAFSPI DLQLADEEID KVVKEAISKP WLPLPLGLKP PSTESVLSEL  540
SKQGISTVPS HINGSKVIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-16319368655Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818600.0LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008448736.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
SwissprotQ6LA431e-142APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A1S3BKD90.0A0A1S3BKD9_CUCME; two-component response regulator-like APRR2 isoform X1
STRINGXP_008448736.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35663465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-138ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]