PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C013782P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 314aa MW: 34868.2 Da PI: 8.48

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C013782P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.1	1e-05	147	184	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R++i +++ eLre++P+ a K s + L ++++Y+ Lq MELO3C013782P1 147 RQQIQDRIKELREIIPSgA------KCSIDSLLDRTIKYMLFLQ 184 89*************77......7777779******9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.236	134	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-6	147	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-5	147	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MSTCTSKLAT GSTDHPRKRL FWELGIEELL DGLSNTSSAT KSSVENHHSI GSRRSKMERL 60 SLDSNPIQLL DPCTSMNLTQ PSCMVGRFPC KKEAVPKSQV SSWIDDSYST NIGGSILELS 120 HKSEEPAKIC KKRVKPGESN RPRPKDRQQI QDRIKELREI IPSGAKCSID SLLDRTIKYM 180 LFLQSVTKYA DKLKETNKPK VNICGGVTWA FKVGATPTVC PVIVEDLSSP GQMLVEMLCE 240 ERGFFLEIAD MIRSYGLTIL KGVMEIREDK IWGQFVVEVK VNANQSITRI NVFLSLMELL 300 QQANIGGTEA VAN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that regulates root development; promotes the production of stele cells in roots. Coordinately controls the number of all vascular cell types by regulating the size of the pool of cells from which they arise. {ECO:0000269\|PubMed:17626058}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681860	0.0	LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008448575.1	0.0	PREDICTED: uncharacterized protein LOC103490712
Swissprot	Q9XIN0	7e-74	LHW_ARATH; Transcription factor LHW
TrEMBL	A0A1S3BK12	0.0	A0A1S3BK12_CUCME; uncharacterized protein LOC103490712
STRING	XP_008448575.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6955	16	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	7e-52	conserved peptide upstream open reading frame 7

Publications ? help Back to Top
Ohashi-Ito K,Matsukawa M,Fukuda H An atypical bHLH transcription factor regulates early xylem development downstream of auxin. Plant Cell Physiol., 2013. 54(3): p. 398-405 [PMID:23359424] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Vera-Sirera F, et al. A bHLH-Based Feedback Loop Restricts Vascular Cell Proliferation in Plants. Dev. Cell, 2015. 35(4): p. 432-43 [PMID:26609958] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]