PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C013727P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WOX
Protein Properties Length: 286aa    MW: 32497.2 Da    PI: 6.6123
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C013727P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.68.1e-22106166257
                     T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     r+R+t+t+ ql++Le+ F + n +ps+++++e++++l    +++e++V++WFqNrRa+ k+
  MELO3C013727P1 106 RQRWTPTPVQLQILERIFDQgNGTPSKQKIKEITAELgqhgQISESNVYNWFQNRRARSKR 166
                     89*****************99**************************************97 PP
2Wus_type_Homeobox101.17.8e-33105168265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +r+RWtPtp Q++iLe+++++G  tP+k++i++itaeL ++G+i++ NV++WFQNr+aR+++kq
     MELO3C013727P1 105 SRQRWTPTPVQLQILERIFDQGNGTPSKQKIKEITAELGQHGQISESNVYNWFQNRRARSKRKQ 168
                        789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.0E-19100172IPR009057Homeodomain-like
PROSITE profilePS5007115.224102167IPR001356Homeobox domain
SuperFamilySSF466891.11E-19102171IPR009057Homeodomain-like
SMARTSM003891.3E-16104171IPR001356Homeobox domain
PfamPF000461.1E-19106166IPR001356Homeobox domain
CDDcd000862.37E-15106168No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MMEWEKPEQQ NPYHHHHHHH HNPPLCDDHL HHLTGTTAAG ALYVKVMTDD QLETLRKQIA  60
VYATICEQLV EMHKTLTAHQ DLTGMRLGNM YCEPLMTSSS HKITSRQRWT PTPVQLQILE  120
RIFDQGNGTP SKQKIKEITA ELGQHGQISE SNVYNWFQNR RARSKRKQQS APPAYGESEV  180
ETEVESPKDK KTKPVDFQTN QSSAPLGDDM CFQSPEMSSE LHFLDPNTNK ADTLFPSNGS  240
LKTARSFGQM SFYEAGNEQL TGKIETPENY SIYQQAEGYN MTGRP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159167RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00617PBMTransfer from AT4G35550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818600.0LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008448483.10.0PREDICTED: WUSCHEL-related homeobox 13
SwissprotO817883e-86WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBLA0A1S3BJS30.0A0A1S3BJS3_CUCME; WUSCHEL-related homeobox 13
STRINGXP_008448483.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18553493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.15e-88WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]