PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C013693P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Dof

Protein Properties

Length: 287aa MW: 32278.7 Da PI: 10.1394

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C013693P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.6	1.6e-39	13	73	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprCdstntkfCy+nnyslsqPr+fCkaCrryWt+GGalrnvPvGgg rknkk++ MELO3C013693P1 13 PEAALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGFRKNKKKK 73 67899*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-31	1	66	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.8E-33	16	71	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.348	17	71	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	19	55	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MAYRARLAMI PQPEAALKCP RCDSTNTKFC YFNNYSLSQP RHFCKACRRY WTRGGALRNV 60 PVGGGFRKNK KKKKTSNNRS KSPTPSQSQL GNSRSIMSRN CNNIESSNTT RDFPSHPSLQ 120 LPSINIIPSL QSQISRSFGN NFAGIHINNS TATAAREFDQ WQRFQQQPFL VAGLESPTTT 180 TTAAEYPEID VNNNNFGANS LQQSSGLVQY NNNNNCPHQQ QLQNLTQFSR IPMKNEEQNQ 240 EQGTMLSNFL RPIDQNNSQF WGSEHQNSWT DHHLSALSSS SSSHLL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269\|PubMed:12887587}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269\|PubMed:10758484, ECO:0000269\|PubMed:12887587}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681918	0.0	LN681918.1 Cucumis melo genomic scaffold, anchoredscaffold00020.
GenBank	LN713265	0.0	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008448399.1	0.0	PREDICTED: dof zinc finger protein DOF3.6
Swissprot	Q9M2U1	2e-43	DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBL	A0A1S3BJL9	0.0	A0A1S3BJL9_CUCME; dof zinc finger protein DOF3.6
STRING	XP_008448399.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24667	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.2	1e-39	OBF-binding protein 3