PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C013453P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 277aa    MW: 30394.8 Da    PI: 7.0336
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C013453P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.4e-10188235455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  MELO3C013453P1 188 SHSLAERARREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 235
                     8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.34E-9182239No hitNo description
SuperFamilySSF474593.93E-17182253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.58184234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-17184251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-8188235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-9190240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MNRALPEMLH CLNTNGNCSD TLSVLERQRA RLKWQQDQLF QQPLNQSCFN RADYGGGFPP  60
PVSVPVDHLT GFPGYMSGGG GGGGGLAHVE MNLQLPAGGG SDGGGEDGVT VEEDENNSKE  120
KRIKTSSEGE LSKTTDQNGT KNNSTITTTT NNNRETSADT SKENSKASEV QKPDYIHVRA  180
RRGQATDSHS LAERARREKI SERMKYLQDL VPGCNKITGK AGMLDEIINY VQSLQRQVEF  240
LSMKLAAVNP RLDFNVDDLF NKEVTKQNNF KFPKLN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817981e-150LN681798.1 Cucumis melo genomic scaffold, anchoredscaffold00019.
GenBankLN7132551e-150LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022953115.11e-108transcription factor bHLH78-like isoform X1
TrEMBLA0A251MVN31e-87A0A251MVN3_PRUPE; Uncharacterized protein
STRINGEMJ010631e-87(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36183463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.12e-56cryptochrome-interacting basic-helix-loop-helix 1