PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C013409P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 314aa MW: 35016.6 Da PI: 10.1198 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 359.7 | 6e-110 | 1 | 313 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye..............pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalver 77 mdd ++e r+k y++ ++ ++l +++++ms+iaerda+irernlalsekk+a+a+rd+a+ qrd+al +r+ al+er MELO3C013409P1 1 MDDGRQHEngRHKLdYFRgspspwnmvppnhvKEpNALV--MNKKIMSIIAERDAAIRERNLALSEKKDALAARDEALRQRDEALVQRDSALMER 93 666655555788887888999999999876663335666..99**************************************************** PP GAGA_bind 78 dnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkk.kkks 171 dn+l+al+ ++n+ s+ p g +v ++tk +++l + + p+++++++++++ ++++a+pi+ a+ea ++++ k+ + +k +k++k + kk + MELO3C013409P1 94 DNALAALEIRDNA--SNFPLGGGVQRKTKRLHHLSN-HMPNISETSYGTKDVHITDAFPITVIASEAVKSQQGKRAKDNKLVSSKTSKPPrKKVG 185 *********9998..77899999*********9998.78************************99999999999777777766666664413445 PP GAGA_bind 172 ekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafk 266 e+ +++ ++++ ++ +++++ +d++ln vs+D+s++P+P+CsCtG rqCYkWGnGGWqS+CCtt +S+yPLP ++r+aR++grKmS+++f+ MELO3C013409P1 186 EDLNRHAATDG--TKYRTDWDGQDVGLNLVSFDDSSMPAPICSCTGFARQCYKWGNGGWQSSCCTTHMSMYPLPHLENKRHARMGGRKMSGSVFT 278 56666666666..68******************************************************************************** PP GAGA_bind 267 klLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 klL++Laa G+dls pvDLkdhWA+HGtn+++tir MELO3C013409P1 279 KLLSRLAAAGHDLSVPVDLKDHWARHGTNRYITIR 313 **********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06217 | 1.4E-97 | 1 | 313 | IPR010409 | GAGA-binding transcriptional activator |
SMART | SM01226 | 5.4E-141 | 1 | 313 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0050793 | Biological Process | regulation of developmental process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MDDGRQHENG RHKLDYFRGS PSPWNMVPPN HVKEPNALVM NKKIMSIIAE RDAAIRERNL 60 ALSEKKDALA ARDEALRQRD EALVQRDSAL MERDNALAAL EIRDNASNFP LGGGVQRKTK 120 RLHHLSNHMP NISETSYGTK DVHITDAFPI TVIASEAVKS QQGKRAKDNK LVSSKTSKPP 180 RKKVGEDLNR HAATDGTKYR TDWDGQDVGL NLVSFDDSSM PAPICSCTGF ARQCYKWGNG 240 GWQSSCCTTH MSMYPLPHLE NKRHARMGGR KMSGSVFTKL LSRLAAAGHD LSVPVDLKDH 300 WARHGTNRYI TIR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681798 | 0.0 | LN681798.1 Cucumis melo genomic scaffold, anchoredscaffold00019. | |||
GenBank | LN713255 | 0.0 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008448032.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE4-like | ||||
Refseq | XP_008448033.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE4-like | ||||
Refseq | XP_008448034.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE4-like | ||||
Refseq | XP_008448035.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE4-like | ||||
Refseq | XP_008448036.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE4-like | ||||
Refseq | XP_008448038.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE4-like | ||||
Refseq | XP_008448039.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE4-like | ||||
Swissprot | Q8S8C6 | 1e-130 | BPC4_ARATH; Protein BASIC PENTACYSTEINE4 | ||||
TrEMBL | A0A1S3BIS4 | 0.0 | A0A1S3BIS4_CUCME; protein BASIC PENTACYSTEINE4-like | ||||
STRING | XP_008448032.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6974 | 33 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21240.2 | 1e-133 | basic pentacysteine 4 |