PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C013408P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bZIP
Protein Properties Length: 565aa    MW: 61718 Da    PI: 6.8523
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C013408P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.63.7e-10421478562
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                     kr++r   NR +A rs +RK  +i eLe kv++L++e ++L  +l  l+  +  l+++
  MELO3C013408P1 421 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQ 478
                     9********************************************9998877666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.2E-18417481IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.737419482IPR004827Basic-leucine zipper domain
PfamPF001707.7E-9421475IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.8E-8421469No hitNo description
SuperFamilySSF579593.16E-11421472No hitNo description
CDDcd147031.04E-24422471No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MGDTEDARTD NLRNLQCSFG TSSSSALKYH FSMDQLKISQ MTCSQGRPQH FQSNFLGDNN  60
RRIGIPPCPN SPQVPPISPY SQIPVSRPMN QQSYNSVPTH SRSLSQPSFF SLDSLPPLSP  120
APFRDSPSTS NSDQVSADTS MEDRDASSHS LLPPSPYTRA NSSKMGDALP PRKAHRRSNS  180
DIPFGLSSMI QSPPVLPFSG SGGLERSTSS KENAGIFKQA SQFVKREPSL EKSIDNHLEG  240
MGEKKSEGDT VDDLFSAYMN LDNIDLFNSS GTNDKNGHEN REDLDSRGSG TKTGGESSDN  300
EAESSVNESG DNSQMPGLNS SAEKREGIKR TAGGDIAPNN RHYRSISMDS FMGKLQFGDE  360
SPKMPPTPPG IRPGQLSSNN LADGNSTPFS LEFGNGEFSG AELKKIMAND KLAEIALTDP  420
KRAKRILANR QSAARSKERK MRYISELEHK VQTLQTEATT LSAQLTLLQR DSVGLTNQNN  480
ELKFRLQAME QQAQLRDALN EALTAEVQRL KLATTDINAQ SHPSNGVMAQ SSMNRHGLQL  540
QQQHQQQQHM QQNGSATTKP ESNQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817980.0LN681798.1 Cucumis melo genomic scaffold, anchoredscaffold00019.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008448029.10.0PREDICTED: probable transcription factor PosF21
RefseqXP_008448030.10.0PREDICTED: probable transcription factor PosF21
TrEMBLA0A1S3BIS80.0A0A1S3BIS8_CUCME; probable transcription factor PosF21
STRINGXP_008448029.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22723484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.31e-147bZIP family protein