PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C013407P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bZIP
Protein Properties Length: 569aa    MW: 62208.6 Da    PI: 6.5756
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C013407P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.53.7e-10424481562
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                     kr++r   NR +A rs +RK  +i eLe kv++L++e ++L  +l  l+  +  l+++
  MELO3C013407P1 424 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQ 481
                     9********************************************9998877666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.2E-18420484IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.737422485IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1709.9E-11424480No hitNo description
SuperFamilySSF579593.09E-11424475No hitNo description
PfamPF001706.7E-9424478IPR004827Basic-leucine zipper domain
CDDcd147035.71E-25425474No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MGDTEDVNTE NMRNHLQCSY GVSSSSAGNL PFSMDQLKIS QMNSSQIRPP HFHSNFLGDN  60
SRRIGIPPSP NSPQIPPISP YSQIPISRPM NQQNYNPVPT HSRSLSQPSF FSLDSLPPLS  120
PSPFRESPTT SNSDQVSADT SMEDRDNNSS HSLLPPSPYM RVNSSKMGDS LPPRKAHRRS  180
NSDIPFGLSS MIQPSPLLPF NSSGGLERST SSKENAGLLK PGSQFVKREP SLEKSVDNNL  240
EGMGERKSDG DSVDDLFSAY MNLDHIDLFN SSGTNDKNGH ENREDLDSRG SGTKTNGGES  300
SDNEAESSVN ESGDSAQMPG LNSSAEKREG IKRTAGGDIA PTTRHYRSVS MDSFMGKLQF  360
GDESPKMPPT PPGVRPGQLS SNNLVDGNSA PFSLEFGNGE FSGAELKKIM ANDKLAEIAL  420
TDPKRAKRIL ANRQSAARSK ERKMRYISEL EHKVQTLQTE ATTLSAQLTL LQRDSVGLTN  480
QNNELKFRLQ AMEQQAQLRD ALNEALTAEV QRLKLATTEL NAQSHPSNGV MSQPAINHHS  540
LQLQLQHHQQ QQQMQQNGST TTKPESNQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817980.0LN681798.1 Cucumis melo genomic scaffold, anchoredscaffold00019.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008448027.10.0PREDICTED: uncharacterized protein LOC103490334
RefseqXP_008448028.10.0PREDICTED: uncharacterized protein LOC103490334
TrEMBLA0A1S3BJD50.0A0A1S3BJD5_CUCME; uncharacterized protein LOC103490334
STRINGXP_008448027.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22723484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.31e-129bZIP family protein