PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C013078P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 280aa    MW: 30726.7 Da    PI: 9.8465
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C013078P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.65.8e-13556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE++ l+ +v+++G+g Wk I +        ++R+  ++k++w+++
   MELO3C013078P2  5 KQKWTSEEEDALLAGVNKHGPGKWKNILKDPDfapslTHRSNIDLKDKWRNL 56
                     79************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.374161IPR017930Myb domain
SuperFamilySSF466895.02E-16259IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.7E-15456IPR009057Homeodomain-like
SMARTSM007172.7E-8459IPR001005SANT/Myb domain
PfamPF002495.1E-9556IPR001005SANT/Myb domain
CDDcd116602.92E-21656No hitNo description
SuperFamilySSF467854.46E-15111193IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005265.4E-14112177IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.4E-12113182IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150424.181114182IPR005818Linker histone H1/H5, domain H15
PfamPF005386.1E-10116175IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGNQKQKWTS EEEDALLAGV NKHGPGKWKN ILKDPDFAPS LTHRSNIDLK DKWRNLSVST  60
ASQGSKEKSR AAPKAKAIVA AISNNQTSAP AKPNASAEAA GDDTPNNSTQ DGKNVPRYYS  120
MIFEALSTIK DSNGCDIGTI VNFIEQRHEV PQNFRRQLSS KLRRLVSQGK LEKVQNCYRV  180
KKDNSLAVKT PTPKQKDVRQ RISQYNTTGG VMPSAETVED AAKAAAYKVA DAENKSFLAA  240
EAVKEAERIA KMAEDTDSML QIIKEMYEKC SRGEIILLA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818271e-162LN681827.1 Cucumis melo genomic scaffold, anchoredscaffold00018.
GenBankLN7132581e-162LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008447622.10.0PREDICTED: telomere repeat-binding factor 4-like
TrEMBLA0A1S3BIT20.0A0A1S3BIT2_CUCME; telomere repeat-binding factor 4-like
TrEMBLE5GB880.0E5GB88_CUCME; MYB transcription factor
STRINGXP_008447622.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.21e-74MYB_related family protein