PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C013023P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 271aa    MW: 30266.3 Da    PI: 5.1162
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C013023P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.54.9e-08195236854
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     + r+RR++i +++  Lr+l+P        K++ a++L +A  Y+k L
  MELO3C013023P1 195 AARKRREKISEKIRVLRRLVPGG-----SKMDIASMLDEAASYLKFL 236
                     569******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.72E-11186241No hitNo description
PROSITE profilePS5088815.466187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-12188245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-13190249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-12193242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-5196236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MEDLLWNSSW SNEEDSGSEE SLFVSDVPGR CSSPPLQELQ TVARILGLPE IDTRTPEIRV  60
EKLAKDSNVF EREKSCPVEV TTGGVLFEVL ENDQGIAPKG GFLDIFENQK LSQQNPIIEK  120
LPSSTNSTTP SPSPSSSSSY IEEIEQVVDQ DRFVSQMKQW IYYAAVFKPV NLGLETVEKK  180
RRRNVKVSKE PQTVAARKRR EKISEKIRVL RRLVPGGSKM DIASMLDEAA SYLKFLRAQI  240
KALEGLNYKF GSTDCLSTCT PFNPTFPTNP *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180199RRRNVKVSKEPQTVAARKRR
2196201RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818270.0LN681827.1 Cucumis melo genomic scaffold, anchoredscaffold00018.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008447580.10.0PREDICTED: transcription factor bHLH87-like
SwissprotQ8S3D23e-44BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A1S3BIP20.0A0A1S3BIP2_CUCME; transcription factor bHLH87-like
STRINGXP_008447580.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45303257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.17e-35bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]