PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C012973P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

HD-ZIP

Protein Properties

Length: 351aa MW: 40462.2 Da PI: 6.0438

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C012973P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	69.2	5.2e-22	72	127	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL+ rqVk+WFqNrR++ k MELO3C012973P1 72 RKKYHRHTTEQIREMEALFKESPHPDEKQRQQLSKRLGLSPRQVKFWFQNRRTQIK 127 7999************************************************9877 PP
2	START	35.1	3.1e-12	247	324	4	68
HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS..........SCEEEEEEEECCSCHHHHHHHHHCCC CS START 4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.........dsgealrasgvvdmvlallveelldd 68 ea +el ++a+a++p+Wv+s+ e++n+de+l++f +++ ++ea+r++++v+m++ +lv++++d MELO3C012973P1 247 DEAVEELKTMAGAGDPLWVRSVetgrEILNYDEYLKTFRFNNNnsntrnclkTHIEASRETALVFMEPSRLVQSFMDE 324 578999******************************8888799*****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.38E-21	62	130	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.139	69	129	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.2E-22	69	123	IPR009057	Homeodomain-like
SMART	SM00389	6.7E-19	71	133	IPR001356	Homeobox domain
Pfam	PF00046	2.8E-19	72	127	IPR001356	Homeobox domain
CDD	cd00086	4.46E-18	72	127	No hit	No description
PRINTS	PR00031	5.0E-5	100	109	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	104	127	IPR017970	Homeobox, conserved site
PRINTS	PR00031	5.0E-5	109	125	IPR000047	Helix-turn-helix motif
Pfam	PF01852	3.0E-6	247	324	IPR002913	START domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MEEVDDGSAG GAARRDNNNN HHDTMTAEVS SENSGAVVRS RSEEEEEEEE EGGGQDDQEN 60 ELVDHGCHVK RRKKYHRHTT EQIREMEALF KESPHPDEKQ RQQLSKRLGL SPRQVKFWFQ 120 NRRTQIKAIQ ERHENTLLKA EMEKLREENK AMREISKKKI GCPNCGTADA TQDDIVFTTT 180 EQLRIKNAKL KAEVEKLRAA LGKYPQAAAS PSTYSSGNEQ ETTNRSCLDF YTGIFGLEKS 240 RIMEKVDEAV EELKTMAGAG DPLWVRSVET GREILNYDEY LKTFRFNNNN SNTRNCLKTH 300 IEASRETALV FMEPSRLVQS FMDEVINYHF STLKCLRLFD KYFVCFFFFF *

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MEEVDDGSAG GAARRDNNNN HHDTMTAEVS SENSGAVVRS RSEEEEEEEE EGGGQDDQEN  60
ELVDHGCHVK RRKKYHRHTT EQIREMEALF KESPHPDEKQ RQQLSKRLGL SPRQVKFWFQ  120
NRRTQIKAIQ ERHENTLLKA EMEKLREENK AMREISKKKI GCPNCGTADA TQDDIVFTTT  180
EQLRIKNAKL KAEVEKLRAA LGKYPQAAAS PSTYSSGNEQ ETTNRSCLDF YTGIFGLEKS  240
RIMEKVDEAV EELKTMAGAG DPLWVRSVET GREILNYDEY LKTFRFNNNN SNTRNCLKTH  300
IEASRETALV FMEPSRLVQS FMDEVINYHF STLKCLRLFD KYFVCFFFFF *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269\|PubMed:11844112}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by GEM. {ECO:0000269\|PubMed:17450124}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM095653	0.0	KM095653.1 Cucumis sativus multicellular trichome development class IV homeodomain-leucine zipper transcription factor (Gl-2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008447518.1	0.0	PREDICTED: homeobox-leucine zipper protein GLABRA 2-like isoform X1
Refseq	XP_016900387.1	0.0	PREDICTED: homeobox-leucine zipper protein GLABRA 2-like isoform X2
Swissprot	P46607	3e-98	HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBL	A0A1S3BII5	0.0	A0A1S3BII5_CUCME; homeobox-leucine zipper protein GLABRA 2-like isoform X1
TrEMBL	A0A1S4DWM6	0.0	A0A1S4DWM6_CUCME; homeobox-leucine zipper protein GLABRA 2-like isoform X2
STRING	XP_008447518.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4714	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79840.1	1e-100	HD-ZIP family protein

Publications ? help Back to Top
Wu R,Citovsky V Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development. Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553 [PMID:28526410]