PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C012635P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 298aa    MW: 33511.3 Da    PI: 8.263
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C012635P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.98.8e-33158215259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vk+s++prsYYrCts++C vkk+vers +dp+vv++tYeg+Hnh+
  MELO3C012635P1 158 EDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCVVKKRVERSYQDPSVVITTYEGQHNHH 215
                     8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-34142217IPR003657WRKY domain
SuperFamilySSF1182904.58E-29150217IPR003657WRKY domain
PROSITE profilePS5081132.271152217IPR003657WRKY domain
SMARTSM007741.1E-37157216IPR003657WRKY domain
PfamPF031061.3E-25158215IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MSNDEGKNVY QQYDPFQYNQ LDMNRSIFHQ QAAAAALDPG LMSFTNFFDT SSLDYNSLSK  60
AFDVSCCSSQ VISAVDDMSK KKASTTTPNS SVSSSSNEAV VEEDSVKSNK LEDIKGRCEN  120
KDEEKSKKQN SNLSKKKEKR PREPRFAFLT KSEIDHLEDG YRWRKYGQKA VKNSPYPRSY  180
YRCTSQKCVV KKRVERSYQD PSVVITTYEG QHNHHCPATL RGHSAGIMSS PFYASASTSV  240
TAASSGPTLP QELFSHLLPT NNCQNDPASM MYQNLSLQQH LQMPDHYGLL QDLFTQK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-291502181078Probable WRKY transcription factor 4
2lex_A4e-291502181078Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818000.0LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008447132.10.0PREDICTED: probable WRKY transcription factor 71 isoform X1
TrEMBLA0A1S3BHB30.0A0A1S3BHB3_CUCME; probable WRKY transcription factor 71 isoform X1
STRINGXP_008447132.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22313483
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.14e-46WRKY DNA-binding protein 71