PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C012624P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

LBD

Protein Properties

Length: 161aa MW: 17234.6 Da PI: 7.9916

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C012624P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	144.7	2.7e-45	21	121	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca+dCv+apyfpa++p+kf vhk+FGasnv+kll++lpe++r+da+ss+vyeA+ar+rdPvyG+vg+i+ lqqq++ l+++la MELO3C012624P1 21 PCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGASNVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLA 115 7********************************************************************************************** PP DUF260 96 llkeel 101 ++++l MELO3C012624P1 116 ITQAQL 121 *99885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.918	20	121	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.8E-44	21	118	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MASSEMMMSG SCKKGNGAAA PCAACKLLRR RCAHDCVFAP YFPADHPHKF SSVHKVFGAS 60 NVSKLLQELP EQQRSDAVSS MVYEANARIR DPVYGCVGTI SCLQQQVDAL QQQLAITQAQ 120 LVQLKMGQFT TTSQSSSSTD DFLSPPPNIN VAASSSLWSC *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-49	17	129	7	119	LOB family transfactor Ramosa2.1
5ly0_B	2e-49	17	129	7	119	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681800	1e-158	LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBank	LN713255	1e-158	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008447124.1	1e-116	PREDICTED: LOB domain-containing protein 4-like
Swissprot	Q8LBW3	1e-54	LBD12_ARATH; LOB domain-containing protein 12
Swissprot	Q9SHE9	8e-55	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A1S3BGP4	1e-115	A0A1S3BGP4_CUCME; LOB domain-containing protein 4-like
STRING	XP_008447124.1	1e-116	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1334	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	4e-50	LOB domain-containing protein 4

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]