PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C012500P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB_related | ||||||||
Protein Properties | Length: 83aa MW: 9003.05 Da PI: 7.684 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.1 | 8.6e-08 | 10 | 54 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 g WT + + +a + + + +W +a+ +g g+t++++k ++ MELO3C012500P1 10 GTWTVKQNKAFEKALAVYDQDtpdRWLNVAKAVG-GKTAEEVKRHY 54 79*****************99*************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.005 | 4 | 58 | IPR017877 | Myb-like domain |
SMART | SM00717 | 5.3E-7 | 8 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.2E-6 | 10 | 54 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-5 | 10 | 62 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.64E-12 | 10 | 66 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.03E-7 | 11 | 54 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 83 aa Download sequence Send to blast |
MASMSSHGSG TWTVKQNKAF EKALAVYDQD TPDRWLNVAK AVGGKTAEEV KRHYALLVED 60 VKFIESGQVP FPYRTSGDGN QG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-34 | 5 | 77 | 3 | 77 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681800 | 1e-134 | LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017. | |||
GenBank | LN713255 | 1e-134 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008447024.1 | 4e-56 | PREDICTED: protein RADIALIS-like 1 | ||||
Swissprot | Q58FS3 | 4e-34 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A1S3BFW6 | 1e-54 | A0A1S3BFW6_CUCME; protein RADIALIS-like 1 | ||||
STRING | XP_008447024.1 | 2e-55 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 6e-36 | RAD-like 1 |
Publications ? help Back to Top | |||
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