PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C012478P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | Trihelix | ||||||||
Protein Properties | Length: 385aa MW: 42284.7 Da PI: 10.5461 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 33.6 | 9.9e-11 | 79 | 162 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v +L++a+++++ +r+klk+++We+v++++ ++ f +++ +qCk+k+e+++k kk++++ + s++p+ ++++ MELO3C012478P1 79 EWSDGAVSTLLDAYESKWILRNRAKLKGHDWEDVARHVsSRSNFtksSKTHTQCKNKIESMKK--KKCRAIPASA----ASSWPWNHRVQ 162 5*************************************755555111556679*********9..7999999984....44688887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.2E-13 | 77 | 160 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MEIKPTPSSP PTTEIKPEIK STPSSPPTAS LTLTQTQTSP SLLFNHHHHH QLPDDNPSPK 60 ENHVSTGGGG GGKRLKRDEW SDGAVSTLLD AYESKWILRN RAKLKGHDWE DVARHVSSRS 120 NFTKSSKTHT QCKNKIESMK KKKCRAIPAS AASSWPWNHR VQHFLGGNSN LTPPPSPPPP 180 LVDLVDPPPP PPSPPPFLSP QNSHGSNGVD NINPSPKEDG VDNGRGGDEL LSEKNKNKNK 240 NNSNNKKKMV PEKTDSSSST PAAIAYSTSD EKLGKGVAAM RSKLQQSKMK KKKRRRRSGE 300 VDSLEEIAGS IRWLAEVVVR SEQARMEMIK DIEKMRAEAE AKRGELDLKR TQIIANTQLE 360 IAKLFASPTT KPLVDHSSLR IART* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 289 | 294 | KKKKRR |
2 | 290 | 295 | KKKRRR |
3 | 290 | 296 | KKKRRRR |
4 | 291 | 296 | KKRRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681896 | 0.0 | LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016. | |||
GenBank | LN713264 | 0.0 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008446967.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A1S3BGZ0 | 0.0 | A0A1S3BGZ0_CUCME; LOW QUALITY PROTEIN: trihelix transcription factor ASIL2 | ||||
STRING | XP_008446967.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4994 | 33 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54390.1 | 1e-73 | sequence-specific DNA binding transcription factors |