PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C012474P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | SRS | ||||||||
Protein Properties | Length: 304aa MW: 32059.7 Da PI: 8.6688 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 193.5 | 7.4e-60 | 118 | 283 | 6 | 154 |
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa......aeaaskrkrelks.kkqsalsstklss 93 a C+dCGn+akk+C+++RCRtCCk rg +C+thvkstWvpaa+rrerq + +a+ ++a +kr+r l ++++a++++++s+ MELO3C012474P1 118 AVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDggssgsSSAGAKRPRVLIPsQSAAAAAAASTSN 212 68*********************************************987766554444444566676888899999885515556677889999 PP DUF702 94 aeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 a++++++et+s lP +v+++avfrc rv++++ ge elaYq++v+igGhvfkG+LydqG+++ MELO3C012474P1 213 ATTPRSFETTSshqdasfkksLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADD 283 *****99999999*******************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 9.6E-57 | 118 | 282 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.4E-24 | 119 | 161 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 3.4E-26 | 234 | 280 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MLGLRDVLFI APTPSSLHQQ TQIISSDHHP SLPLPSSTAL GVSVGIFPLL AATPCLPPSQ 60 PPPNNHTPDD VTDRTRTFDN LKRTQDFGFG KGESLIGGPG NNGSDEHVKG DAGDGSMAVC 120 RDCGNRAKKE CEYRRCRTCC KGRGNHCSTH VKSTWVPAAR RRERQMLVVM DGVATASGDG 180 GSSGSSSAGA KRPRVLIPSQ SAAAAAAAST SNATTPRSFE TTSSHQDASF KKSLPGHVRA 240 PAVFRCHRVT AISSGEGELA YQATVNIGGH VFKGFLYDQG ADDKNAFPSI SHLHLDSGNH 300 HRE* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681896 | 0.0 | LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016. | |||
GenBank | LN713264 | 0.0 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008446964.1 | 0.0 | PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | A0A1S3BFS5 | 0.0 | A0A1S3BFS5_CUCME; protein LATERAL ROOT PRIMORDIUM 1 | ||||
STRING | XP_008446964.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5704 | 31 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.2 | 7e-55 | Lateral root primordium (LRP) protein-related |