PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C012391P3
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 280aa    MW: 30940.7 Da    PI: 7.8547
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C012391P3genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.62.1e-52291561128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     l+pGfrFhPtdeelv +yLk+kv gk++++ ++i+evdiyk+ePwdL   +++k++++e+yfFs  dkky +g r nrat++gyWkatg+d++v 
  MELO3C012391P3  29 LAPGFRFHPTDEELVIYYLKRKVCGKSFRF-NAISEVDIYKSEPWDLAgkSRLKSRDQEYYFFSVLDKKYGNGARMNRATSQGYWKATGNDRPVR 122
                     579*************************99.89**************85348889999************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + ++++vglkktLvf++grap+g++t+Wvmheyrl
  MELO3C012391P3 123 H-DSRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRL 156
                     *.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-6025183IPR003441NAC domain
PROSITE profilePS5100557.24429183IPR003441NAC domain
PfamPF023652.0E-2631156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGSETLTLST PLLPTKPIAA PPAATPTALA PGFRFHPTDE ELVIYYLKRK VCGKSFRFNA  60
ISEVDIYKSE PWDLAGKSRL KSRDQEYYFF SVLDKKYGNG ARMNRATSQG YWKATGNDRP  120
VRHDSRTVGL KKTLVFHSGR APDGKRTNWV MHEYRLVDEE LEKAGAGTGS SQDAYVLCRV  180
FHKSNIGPPN GHRYAPFIEE EWDDAGSVLI PGEEIADGKI ASHDAQSERN SNSVCAAEGS  240
NNGACGEGKD GMQVCFSLNS VRNSFQCETL KFVSDHMYK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-492918515170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00612ChIP-seqTransfer from AT3G10490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008446812.10.0PREDICTED: NAC domain-containing protein 16
SwissprotQ9SQX91e-103NAC50_ARATH; NAC domain containing protein 50
TrEMBLA0A1S3BFG80.0A0A1S3BFG8_CUCME; NAC domain-containing protein 16
STRINGXP_008446812.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.11e-100NAC domain containing protein 50
Publications ? help Back to Top
  1. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]