PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C012365P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | Trihelix | ||||||||
Protein Properties | Length: 216aa MW: 25332.2 Da PI: 6.0033 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 41.5 | 3.5e-13 | 3 | 49 | 39 | 87 |
trihelix 39 rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +e g++rs k+Ckek++nl k+ykk+keg+ +r+ + +++++f+qlea MELO3C012365P1 3 EEYGYKRSGKKCKEKFDNLYKYYKKTKEGKTGRH--DGKHYRFFRQLEA 49 578****************************985..5557*******85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.6E-9 | 3 | 50 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MAEEYGYKRS GKKCKEKFDN LYKYYKKTKE GKTGRHDGKH YRFFRQLEAI YGQSNDQISS 60 PIIESNFYRN SVARSETPPP EKYPSTGGEN HQEAGGGMSL SFTISSDFET SSSGNYHDDD 120 LNNNNKGESW REEVEKMVDM KMSRLMEVQE NWMEKIMSSV EDGEKERIMK EEEWRKQEMA 180 RFDHEMSEFC ARERAWLHAR ELAFMEIVKK FADKG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 7 | 15 | KRSGKKCKE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681896 | 0.0 | LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016. | |||
GenBank | LN713264 | 0.0 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008446778.1 | 1e-152 | PREDICTED: trihelix transcription factor PTL-like | ||||
TrEMBL | A0A1S3BFD9 | 1e-150 | A0A1S3BFD9_CUCME; trihelix transcription factor PTL-like | ||||
STRING | XP_008446778.1 | 1e-151 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2022 | 34 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03680.1 | 1e-43 | Trihelix family protein |