PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C012213P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 373aa MW: 41060.1 Da PI: 5.9798

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C012213P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.1	9e-15	177	223	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr++lP+ +K +Ka+ L +++e++k+L MELO3C012213P1 177 KSHSEAERRRRERINNHLAKLRSILPST-----TKTDKASLLAEVIEHVKEL 223 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.698	174	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.6E-12	177	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-14	178	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-14	178	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.2E-13	180	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.26E-5	187	226	No hit	No description
Gene3D	G3DSA:3.30.70.260	2.4E-4	273	324	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MCGEDQEEDH QQQHQGECSQ TIENMFQEQL LLQQQLQNND GDQSNNDHHM IYGVEHHHHG 60 IGRSGSLIFP PEVMPPMLQP WSSLNPFMIP PPPPPPLPTS LSCSSSSYGS LFNRRPPNCL 120 QFAYDGPSSA DHLGRIISTT LGPVVHPGST APFGLQAELG KMSAQEIMDA KALAASKSHS 180 EAERRRRERI NNHLAKLRSI LPSTTKTDKA SLLAEVIEHV KELKRQTSII AETSPIPTEV 240 DEVSVDDASE QEMMMISNNG SISSSAKFVI KASLCCEDRS DLLPDLIKTL KSLRLTTLKA 300 EITTLGGRLR NVLFVTADEE QQQQHNITSI IQDALKAVIE KTAGDHDSSS ANIKRQRTTT 360 TNNINNNNNN IL*

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MCGEDQEEDH QQQHQGECSQ TIENMFQEQL LLQQQLQNND GDQSNNDHHM IYGVEHHHHG  60
IGRSGSLIFP PEVMPPMLQP WSSLNPFMIP PPPPPPLPTS LSCSSSSYGS LFNRRPPNCL  120
QFAYDGPSSA DHLGRIISTT LGPVVHPGST APFGLQAELG KMSAQEIMDA KALAASKSHS  180
EAERRRRERI NNHLAKLRSI LPSTTKTDKA SLLAEVIEHV KELKRQTSII AETSPIPTEV  240
DEVSVDDASE QEMMMISNNG SISSSAKFVI KASLCCEDRS DLLPDLIKTL KSLRLTTLKA  300
EITTLGGRLR NVLFVTADEE QQQQHNITSI IQDALKAVIE KTAGDHDSSS ANIKRQRTTT  360
TNNINNNNNN IL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	182	187	ERRRRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681896	0.0	LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBank	LN713264	0.0	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008446553.2	0.0	PREDICTED: transcription factor bHLH30
Swissprot	Q9S7Y1	8e-96	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A1S3BFZ7	0.0	A0A1S3BFZ7_CUCME; transcription factor bHLH30
STRING	XP_008446553.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4589	34	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	2e-74	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]