PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C012130P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 497aa    MW: 54354.1 Da    PI: 8.5294
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C012130P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.91e-33203259259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers  +++v+ei+Y+geHnh+
  MELO3C012130P1 203 DDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCPVKKKVERSL-EGQVTEIIYKGEHNHK 259
                     8****************************************.***************7 PP
2WRKY106.81.1e-33382440159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK vkg+++prsYY+Ct++gC+v+k+ver+++dpk+v++tYeg+Hnh+
  MELO3C012130P1 382 LDDGYRWRKYGQKIVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHD 440
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.2E-30188261IPR003657WRKY domain
SuperFamilySSF1182904.71E-26200261IPR003657WRKY domain
SMARTSM007749.1E-38202260IPR003657WRKY domain
PROSITE profilePS5081123.284203261IPR003657WRKY domain
PfamPF031063.0E-26203259IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.0E-37368442IPR003657WRKY domain
SuperFamilySSF1182901.18E-29374442IPR003657WRKY domain
PROSITE profilePS5081138.744377442IPR003657WRKY domain
SMARTSM007744.0E-39382441IPR003657WRKY domain
PfamPF031062.6E-26383440IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MGEDDEQPPP PPPPSKSKPF ALRPTINLPP RTSMESLFSG GPGLGFGFSP GPMTLVSSFF  60
SDSDDCKSFS QLLAGAMASP VAAVPPSTSE FKSSPGLLDS PGLFSPGQGP FGMTHQQALA  120
QVTMQAVEAY SHNQMQAASF SSSVAPSASS LQLLTSLPGE KTKDQLMQLP FHNSSVASKE  180
PSDNSQSEQR LQLSSCNVDK PADDGYNWRK YGQKQVKGSE FPRSYYKCTH PNCPVKKKVE  240
RSLEGQVTEI IYKGEHNHKR PQPNKRSKDV GNSNGYSIVH GNLELSSQVR SGYLNKLDEE  300
TSISSIRKKD QESSRVTNDQ FSGNSDGEGG SEIETGVNRK DEDEPDAKRR NTEVRNSEPA  360
SSHRTLTESR IIVQTTSEVD LLDDGYRWRK YGQKIVKGNP YPRSYYKCTT PGCNVRKHVE  420
RASTDPKAVI TTYEGKHNHD VPLGKTSSHS SVSGNISQLK SQNIVTEKKN SSNNTDRGNS  480
HQQPTGLLRL KEEQIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-43203442877Probable WRKY transcription factor 4
2lex_A3e-43203442877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008446405.20.0PREDICTED: probable WRKY transcription factor 3 isoform X1
SwissprotQ9ZQ701e-155WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A1S3BEZ90.0A0A1S3BEZ9_CUCME; probable WRKY transcription factor 3 isoform X1
STRINGXP_008446405.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-141WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]