PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C012104P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Dof

Protein Properties

Length: 426aa MW: 46367.5 Da PI: 8.6269

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C012104P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.1	1.1e-39	98	158	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ss MELO3C012104P1 98 PDKILPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSS 158 7899******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	96	155	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.5E-32	100	156	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.882	102	156	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	104	140	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MAEVEMRDPI IKLFGKTISL PSDSKFLSSE TTEKETSCEE LGLEKEGNSS GNQITDQTTS 60 GVSENPLEER EISSPKASKN EEQSETSNSP DNKTSKKPDK ILPCPRCNSM DTKFCYFNNY 120 NVNQPRHFCK NCQRYWTAGG TMRNVPVGAG RRKNKNSSSS HFRQLIIPDG GIHPHQFLDN 180 NGTFLTFASD SSISNSQSCN PNGFLINTEN GDDHSSKSSI TVSNSSEKGA KMASQQSIAK 240 NVFPFLPQLQ SFTGLSLPYS SITPPSAPFY PPGIPVSYYP SQPYWGYLAP PSLTIINPNS 300 QNSSTNSSVL GKRSRDGKLV KSPSNTESEI VKQKNSEEPS LGIPKTMKVD DPNEAAKSSI 360 WSTLGIKNDK KAGGGSTSTT INGGSLFVSL QRSTKGKEET QIESWSLLQA NPAAFSRALK 420 FREIV*

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MAEVEMRDPI IKLFGKTISL PSDSKFLSSE TTEKETSCEE LGLEKEGNSS GNQITDQTTS  60
GVSENPLEER EISSPKASKN EEQSETSNSP DNKTSKKPDK ILPCPRCNSM DTKFCYFNNY  120
NVNQPRHFCK NCQRYWTAGG TMRNVPVGAG RRKNKNSSSS HFRQLIIPDG GIHPHQFLDN  180
NGTFLTFASD SSISNSQSCN PNGFLINTEN GDDHSSKSSI TVSNSSEKGA KMASQQSIAK  240
NVFPFLPQLQ SFTGLSLPYS SITPPSAPFY PPGIPVSYYP SQPYWGYLAP PSLTIINPNS  300
QNSSTNSSVL GKRSRDGKLV KSPSNTESEI VKQKNSEEPS LGIPKTMKVD DPNEAAKSSI  360
WSTLGIKNDK KAGGGSTSTT INGGSLFVSL QRSTKGKEET QIESWSLLQA NPAAFSRALK  420
FREIV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681896	0.0	LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBank	LN713264	0.0	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008446369.1	0.0	PREDICTED: cyclic dof factor 1
TrEMBL	A0A1S3BEW8	0.0	A0A1S3BEW8_CUCME; cyclic dof factor 1
STRING	XP_008446369.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24617	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62430.1	2e-63	cycling DOF factor 1