PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C012039P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

MYB_related

Protein Properties

Length: 305aa MW: 33078.1 Da PI: 9.9815

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C012039P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.8	1.2e-13	93	137	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky MELO3C012039P1 93 PWTEEEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 137 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50158	8.911	7	22	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS51294	14.703	86	142	IPR017930	Myb domain
SuperFamily	SSF46689	3.07E-17	88	143	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.6E-17	89	140	IPR006447	Myb domain, plants
SMART	SM00717	1.5E-9	90	140	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-11	93	137	IPR009057	Homeodomain-like
Pfam	PF00249	9.1E-11	93	137	IPR001005	SANT/Myb domain
CDD	cd00167	2.01E-9	93	137	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0009723	Biological Process	response to ethylene
GO:0009733	Biological Process	response to auxin
GO:0009737	Biological Process	response to abscisic acid
GO:0009739	Biological Process	response to gibberellin
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0031540	Biological Process	regulation of anthocyanin biosynthetic process
GO:0046686	Biological Process	response to cadmium ion
GO:0080167	Biological Process	response to karrikin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003682	Molecular Function	chromatin binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MNVSRTCSLC GNNGHNSRTC PEADGTGGFM LFGVRLTTSE GSNSFRKSVS MNNLSQYAEH 60 PPIQDSNHAD AGYASDDVVH PSDRCGGRKR GIPWTEEEHR LFLLGLQKVG KGDWRGISRN 120 FVKTRTPTQV ASHAQKYFLR RNNFNRRRRR SSLFDITTHT FTSSSKEDEA MQPPLPPSPP 180 QKDNTPGNFS VKIHAAKPPP ASVVSGVVDS KAVVSTLTLN SSNYRGKPCN SKIIRPIPML 240 PLSPYPKFAE LNINERIPED PLPLTLKLST SHSEGQSPAA ASQSSGSFQT MSGGGDSIDI 300 VSVA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor (PubMed:23888064, PubMed:24806884). Direct regulator of the transcription of peroxidase (Prxs) and reactive oxygen species (ROS)-related genes via the recognition of 5'-ATCACA-3' motif (PubMed:24806884). Binds to 5'-TATCCA-3' motif (TA box) and represses the activity of corresponding promoters (e.g. sugar response genes) (PubMed:25920996). Regulates hypocotyl elongation in response to darkness by enhancing auxin accumulation in a phytochrome-interacting factor (PIF) proteins-dependent manner. Promotes lateral roots formation (PubMed:23888064). Promotes cell expansion during leaves development via the modulation of cell wall-located Prxs (PubMed:24806884). Plays a critical role in developmentally regulated and dark-induced onset of leaf senescence by repressing the transcription of several genes involved in chloroplast function and responses to light and auxin. Promotes responses to auxin, abscisic acid (ABA), and ethylene (PubMed:25920996). {ECO:0000269\|PubMed:23888064, ECO:0000269\|PubMed:24806884, ECO:0000269\|PubMed:25920996}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00630	PBM	Transfer from PK17526.1	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by CdCl(2) (PubMed:16463103). Accumulates in the dark (PubMed:23888064, PubMed:25920996). Diurnal expression pattern with maximal levels in the morning (at protein level). Specifically induced during leaf expansion (PubMed:24806884). Expressed in old and dark-treated leaves (PubMed:25920996). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:23888064, ECO:0000269\|PubMed:24806884, ECO:0000269\|PubMed:25920996}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681896	0.0	LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBank	LN713264	0.0	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008446280.1	0.0	PREDICTED: transcription factor MYB1R1
Swissprot	Q9LVS0	2e-55	KUA1_ARATH; Transcription factor KUA1
TrEMBL	A0A1S3BE68	0.0	A0A1S3BE68_CUCME; transcription factor MYB1R1
STRING	XP_008446280.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5338	33	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G70000.2	1e-63	MYB_related family protein

Publications ? help Back to Top
Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]