PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C011994P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 475aa    MW: 53603.1 Da    PI: 6.0478
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C011994P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.65.9e-10291337455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     ++ + ErrRR++i++++ +Lr l+P+ +      K++ a+i   A+ YI++L+
  MELO3C011994P1 291 KNLMTERRRRNKIRDRLYTLRALVPNiS------KMDRASIIVDAIGYIRELE 337
                     55689*********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.6E-1611157IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474597.33E-16286352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.408287336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-15289353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-8291337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-11293342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048736.05E-4409469No hitNo description
Gene3DG3DSA:3.30.70.2606.8E-4425472No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MRSFEGALEF LRPLVEIKLW DYCIVWKSRD DDSLRFIDWV GCCCSGGVSD AGGKEEAGET  60
IPAALCKDTR FRHFRRTNAC QALAQFPSSI SLNTGVHGDV LISNQPMWLT SGEASYFSSF  120
SHELTGTRVL IPVSGGIVEL FATKRMPREG EVIDFVMAHC NISLEQEFET ESALLDAGLN  180
EKILSSSTKY YSLNWPDPQP FLGFKSKLEI LPSVSQSSSF PGCGEGSSSG SKPSPGLFNQ  240
PIHTSFESKA ATHREELLEQ QKNVVSDHSK ILQKDEAKTG EKQEKEVYKS KNLMTERRRR  300
NKIRDRLYTL RALVPNISKM DRASIIVDAI GYIRELEENV KSLQNELIQL EHKDCQKNKH  360
LKISPLEKTN DDINSWSFVQ DDQPMFILNE EKPMEVEVEV MRINERDFLI KLFCKRKQGG  420
VVSSIEAMYS LGLQVIDVNI TTFGGMVLNI FHVEANENDI QPKRLRDSLM KLTS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008446203.10.0PREDICTED: transcription factor ABORTED MICROSPORES
TrEMBLA0A1S3BFB90.0A0A1S3BFB9_CUCME; transcription factor ABORTED MICROSPORES
TrEMBLE5GBJ20.0E5GBJ2_CUCME; BHLH transcription factor
STRINGXP_008446203.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122653033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-74bHLH family protein