PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C011835P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

TCP

Protein Properties

Length: 405aa MW: 41215.5 Da PI: 9.74

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C011835P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128.1	9e-40	42	159	3	92
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ + s +ss+s+ s++ MELO3C011835P1 42 ANKRSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSsLNISIRSSGSTLSAPpsksaphs 136 579*****************************************************************888655555555553333344344455 PP TCP 89 ...................kaak 92 ++a+ MELO3C011835P1 137 fhgaalalahhphayeegfAHAA 159 55555555555555555542222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.0E-40	46	177	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.442	47	101	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MASTSSSAST HQLDASLVIA TRSDTTAAAA DPSPRSTSTT NANKRSTKDR HTKVEGRGRR 60 IRMPATCAAR VFQLTRELGH KSDGETIEWL LQQAEPAIIA ATGTGTIPAN FSSLNISIRS 120 SGSTLSAPPS KSAPHSFHGA ALALAHHPHA YEEGFAHAAL LGFHHQQQQQ QQHQLNLMTA 180 DQIGEGLPSG GGGESTDNYM RKRFREDLFK EDTQSPGESS GGGGSPKAMK SDLQLEKQQQ 240 QQPSASSSSG LLRPGAAMWA VATPGPSSGA SNTFWMLPVT AGSGGGNVGN SSGGGSGGGG 300 GGGGGGLEAH QMWPFSTSGN TLQAPLHLMP RFNIPGGVEI QAAAAGGGRG GGGQLQLGSM 360 LMQQATGGGG GGGLGVSETN LGMLAALNAA YNSRSGSGFK YQFR*

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MASTSSSAST HQLDASLVIA TRSDTTAAAA DPSPRSTSTT NANKRSTKDR HTKVEGRGRR  60
IRMPATCAAR VFQLTRELGH KSDGETIEWL LQQAEPAIIA ATGTGTIPAN FSSLNISIRS  120
SGSTLSAPPS KSAPHSFHGA ALALAHHPHA YEEGFAHAAL LGFHHQQQQQ QQHQLNLMTA  180
DQIGEGLPSG GGGESTDNYM RKRFREDLFK EDTQSPGESS GGGGSPKAMK SDLQLEKQQQ  240
QQPSASSSSG LLRPGAAMWA VATPGPSSGA SNTFWMLPVT AGSGGGNVGN SSGGGSGGGG  300
GGGGGGLEAH QMWPFSTSGN TLQAPLHLMP RFNIPGGVEI QAAAAGGGRG GGGQLQLGSM  360
LMQQATGGGG GGGLGVSETN LGMLAALNAA YNSRSGSGFK YQFR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	346	352	GGRGGGG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681896	0.0	LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBank	LN713264	0.0	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008445993.2	0.0	PREDICTED: transcription factor TCP8
TrEMBL	A0A1S3BEP4	0.0	A0A1S3BEP4_CUCME; transcription factor TCP8
STRING	XP_008445993.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6077	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	9e-51	TCP family protein