PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C011754P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

TCP

Protein Properties

Length: 257aa MW: 26480.4 Da PI: 10.5046

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C011754P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.1	1.5e-38	30	124	2	92
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.......k 89 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++a++++ + s+ ++ g + MELO3C011754P1 30 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSVSLSVRGNG---GGsaslsspS 121 78*******************************************************************8882222222222...2222333222 PP TCP 90 aak 92 + + MELO3C011754P1 122 STT 124 222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.6E-33	36	121	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.209	36	90	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MSNSDHTNGV SNAAAIDSHK NQSSSNGALA VKKPPSKDRH SKVDGRGRRI RMPIICAARV 60 FQLTRELGHK SDGQTIEWLL RQAEPSIIAA TGTGTTPANF SSVSLSVRGN GGGSASLSSP 120 SSTTSTLSLS RPQALSGPTP FILGKRVRSD DDAKDDGLGV GQAVGSIVGP TGPGGYWAIP 180 ARPDYGQVWS FAAAAPSEMV VQQGGISQQA SLFAQQQQPI REASAARVGN YLPGHLNLLA 240 SLSGGGGSGR REDDPR*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681896	0.0	LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBank	LN713264	0.0	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008445886.1	0.0	PREDICTED: transcription factor TCP7-like
Swissprot	Q9FMX2	9e-89	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A1S3BDR1	0.0	A0A1S3BDR1_CUCME; transcription factor TCP7-like
STRING	XP_008445886.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5469	31	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	9e-67	TCP family protein