PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C011722P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family AP2
Protein Properties Length: 317aa    MW: 34934.8 Da    PI: 8.6348
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C011722P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.3e-17136185155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  MELO3C011722P2 136 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 185
                     78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.14E-16136194IPR016177DNA-binding domain
PfamPF008473.0E-9136185IPR001471AP2/ERF domain
CDDcd000189.04E-12137195No hitNo description
PROSITE profilePS5103217.899137193IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-17137193IPR001471AP2/ERF domain
SMARTSM003808.2E-33137199IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MMLDLNDSIT NRDETAASRI VMEDSETSNS SVVNATDEVS NSRDEDSSVL IFDILKRESS  60
GGGSGGGASS ELVTQTLFPV VGGWGDSGSP VPRTHWLNLS STADSGGGGG PPELRIVQQK  120
QQQVRKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA  180
IKFRGVDADI NFSISDYDED MKQMKNLSKE EFVHVLRRQS TGFSRGGSKL RGLSLQKYGR  240
WENQMSQIIG KNGIEQRSYK GDTMVDSNNG ANGHNLDLSI GGIFNYHFTN SPQKLNIERP  300
KVILLLVSCI ELKNLE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008445839.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7
SwissprotQ9SK031e-69RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A1S3BEB50.0A0A1S3BEB5_CUCME; ethylene-responsive transcription factor RAP2-7
STRINGXP_008445839.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.29e-61related to AP2.7