PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C011683P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | Trihelix | ||||||||
Protein Properties | Length: 564aa MW: 63552.8 Da PI: 6.227 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 87.5 | 1.6e-27 | 58 | 143 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+laL+++r++m++ +r++ k+plW+evs+k+ e gf+r+pk+Ckek+en+ k++k++k+ +++++++s++ +++ d+le MELO3C011683P1 58 RWPRQETLALLKIRSDMDTIFRDATHKAPLWDEVSRKLGELGFNRTPKKCKEKFENVYKYHKRTKDVRSGKSDNSKKVYRFSDELE 143 8*********************************************************************9999999999999987 PP | |||||||
2 | trihelix | 103.1 | 2.1e-32 | 393 | 478 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev aLi++r+eme +++++ k+ lWee+s++mr g++rs+k+Ckekwen+nk++kk+k ++kkr +e+s+tcpyf+ql+a MELO3C011683P1 393 RWPKGEVEALIRLRTEMEMKYQENGPKGLLWEEISSAMRGLGYNRSSKRCKEKWENINKYFKKVKYSNKKR-PEDSKTCPYFHQLDA 478 8*********************************************************************8.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.364 | 51 | 115 | IPR017877 | Myb-like domain |
SMART | SM00717 | 9.3E-5 | 55 | 117 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 1.40E-22 | 57 | 122 | No hit | No description |
Pfam | PF13837 | 3.9E-17 | 57 | 138 | No hit | No description |
SMART | SM00717 | 1.1E-4 | 390 | 452 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 7.538 | 392 | 450 | IPR017877 | Myb-like domain |
CDD | cd12203 | 2.86E-26 | 392 | 457 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-4 | 393 | 449 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 8.9E-23 | 393 | 479 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 564 aa Download sequence Send to blast |
MDVVDPGEAA VTTEAVDAHE VGDSGGGGSG NGSNSGEEEK GSSLLLFEDG EKNFGGNRWP 60 RQETLALLKI RSDMDTIFRD ATHKAPLWDE VSRKLGELGF NRTPKKCKEK FENVYKYHKR 120 TKDVRSGKSD NSKKVYRFSD ELEAFDHPTS QHQNHMLFQS HHRHPSPPPP PPVLPTTTPP 180 PSFNPPAPKT INSTVPSTMN NITTNNKYSL PPKSSNNPLS NLPNMAANVI FSSSTSSSTA 240 SEEDPFRSSR RRRKKRKWSD FFLRLTKEVI EKQEGLQLKF LEALERIENQ RKLRDEAWRT 300 KEMTRVNQEH EVLVQEMSMA AAKDAAVVAF LQKIAPSSPP VPVPPPLPMT MTTQLQNGEN 360 NGKLSSTIGS HVISTTTTNG KVMSSIIVGS PSRWPKGEVE ALIRLRTEME MKYQENGPKG 420 LLWEEISSAM RGLGYNRSSK RCKEKWENIN KYFKKVKYSN KKRPEDSKTC PYFHQLDALY 480 REKEKSNMNF DINSQMEPLM VEPEQQWPPA FQPNNQVMGN NLQRINGEAN QEEEEDDHGD 540 DDDNDDDVEE EDIGGSSSTD VED* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 250 | 255 | RRRKKR |
2 | 250 | 256 | RRRKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681817 | 0.0 | LN681817.1 Cucumis melo genomic scaffold, anchoredscaffold00015. | |||
GenBank | LN713257 | 0.0 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008445762.1 | 0.0 | PREDICTED: trihelix transcription factor GT-2-like | ||||
Swissprot | Q39117 | 1e-125 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A1S3BE60 | 0.0 | A0A1S3BE60_CUCME; trihelix transcription factor GT-2-like | ||||
STRING | XP_008445762.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF373 | 34 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 2e-63 | Trihelix family protein |