PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C011576P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family CO-like
Protein Properties Length: 336aa    MW: 38557.4 Da    PI: 8.1538
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C011576P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box279.3e-091658339
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    +r C+ + + +++++C  ++ +lC++C ++ H+       H++
  MELO3C011576P1 16 ARACDSCVRRRARWYCAADDAFLCQSCDTTVHSAnplarrHQR 58
                    578*****************************65677777765 PP
2CCT69.31e-23278321144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  MELO3C011576P1 278 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 321
                     9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.8931461IPR000315B-box-type zinc finger
SMARTSM003361.0E-91461IPR000315B-box-type zinc finger
PfamPF006431.3E-71658IPR000315B-box-type zinc finger
CDDcd000212.20E-91761No hitNo description
PfamPF062034.1E-18278320IPR010402CCT domain
PROSITE profilePS5101716.083278320IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MMSRKNIANA VGGKTARACD SCVRRRARWY CAADDAFLCQ SCDTTVHSAN PLARRHQRLR  60
LNSSNSPTLN SPSWVSGFTR KPRTPRPRPK SNDLIHVSVV PETDDATSHE DEHLEDQLLY  120
RVPTLDVNVS DFGGDVEKNL EREWFDIEEE LGFVKVEESC WRIGEGFDSD QVDFLMDFEE  180
IKIPPLVVGV KNERHEDNED DESGITNKNK RRVLSLRLDC EAVIAAWGNL QSPWTNGQRP  240
DFDPDQPWPN SMEVCEVRYG QRCGEHGLRT AAMGDGGREA RVSRYREKRR TRLFSKKIRY  300
EVRKLNAEKR PRMKGRFVKR TPFPPQPTLP FITIN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1288304RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818170.0LN681817.1 Cucumis melo genomic scaffold, anchoredscaffold00015.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008445668.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 6
SwissprotQ8LG763e-77COL6_ARATH; Zinc finger protein CONSTANS-LIKE 6
TrEMBLA0A1S3BD970.0A0A1S3BD97_CUCME; zinc finger protein CONSTANS-LIKE 6
TrEMBLE5GC840.0E5GC84_CUCME; Zinc finger (B-box type) family protein
STRINGXP_008445668.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.19e-67B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]